Tame000945.1
Basic Information
- Insect
- Temnothorax americanus
- Gene Symbol
- -
- Assembly
- GCA_030770215.1
- Location
- JASTWO010000008.1:771789-774598[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.2 1.9e+02 3.9 3.0 1 23 395 417 395 417 0.94 2 14 0.026 4.1 9.2 0.6 1 23 425 448 425 448 0.94 3 14 2.2e-05 0.0033 18.9 2.7 1 23 454 478 454 478 0.93 4 14 5.4 8.4e+02 1.9 6.3 1 23 553 575 553 575 0.93 5 14 0.0068 1 11.1 0.2 1 23 582 605 582 605 0.90 6 14 0.00012 0.018 16.6 1.6 1 23 611 633 611 633 0.97 7 14 0.33 51 5.7 5.5 1 23 639 661 639 661 0.99 8 14 2.5e-06 0.00038 21.9 1.2 1 23 666 688 666 688 0.97 9 14 0.095 15 7.4 1.7 1 23 701 724 701 724 0.92 10 14 7.2e-05 0.011 17.3 2.4 1 23 740 763 740 763 0.96 11 14 0.0014 0.21 13.2 0.5 1 23 772 795 772 795 0.98 12 14 0.0067 1 11.1 0.7 1 23 800 823 800 823 0.94 13 14 0.00057 0.088 14.4 2.0 1 23 853 876 853 876 0.98 14 14 2.1 3.2e+02 3.2 0.1 2 10 882 890 881 902 0.83
Sequence Information
- Coding Sequence
- ATGGACGATACGTGCCGTCTGTGTAGTATTAAACTTGATATCGAATATTCCAAGTATATCTTTGATGAGGCAACTAATTTGGCGCAGATAATAAATGAGACTTTACCAATCAAGgTCTCGCAAGATGATCATTCCAAGTCGAAACATATATGTTTAGACTGTTACAATAAAGTTATCAGTCATTATGAGTTTGTTCAAAATGTATTGGCATGTTCGAAGGAAAGCAAGACAAAAATCAACTCTTTCTTCGAGGTCAATAGAAATGAGAAATTGGAAAATGTGGTAATTTCTAAACTGCAGAGTGATATGATATGCACCTGTCCGAATTGCAACAAAGATTTAATACTCTTGTTAAAGAACAATTCTGAAGATAGTAATTATGCATTTGACATTTTATTGACTGTTGTGGATCAAATAGAAAAAGTAGAATCAGTAGAAGAAAATGTTCAAATATTTGAAGACACAATGGAGTTTGTTAACGTCTCTACACAGAACTCAAGTACAGATAGTAAATTACATGAATTGTCATTGAATCATAACATCGTCGAAGAGGATGTGACAAATGATAACAAGCAAGATATCAATGGGATACATAGAAGCTCGAAAAGTGATACTAGCCATACAAATCTTATcattacattgcaaaaaactGATGTACCATGTGAACCGAGTAAAGGTACAAAGAGAAAGTATCAAGTAGGCGTTTCTACTGAAACATCTATTAATCCTATTAAGTTGCAAAAACTGCAAGCAAGATTAGATGCAATAAAACAAGATGTCGATGAATTGAACGGTGATCACGACAGATTAAATGTAACTAGCTTGTTGACATTCCAGTCAGTAAACAATGACGTAGTATGTCTCAatgaagaaatagaaaatgaaGAGGAAAATTGTACGGAATATACGATGAGAGGAAAGCACTTCGATGAGAATCTTACTGAATCGaaaacattaaaaacaaaattagatgCGACGGAACAAAATGAATTGACCAATGATTATGATAGGTCAAGTTTAGCTGGCTTGATAACATTCCAGCCAGAAAGCAATGACACGGAATGTTTCAGTTGTGATGCAGAGACTCAAGAAGATAGTACAAGAGACGTGACGAAAACGGAAAGAGCGTGCATCAACGAAGATGAGCCAAATGACATCGACATTCCAAAAAGTCATCTAAAACACATGTGCAATTTGTGTGGAGTTCGTTATAATTCACAATTGAAGTACAAGTTTCACATGGACAGACACAAgttcaacaaaataaataaatacgtttGTTTAATATGCTCCAAAGAAACTAAAAATGAAAACTTGTTGTGGGAGCACTATATCCACATGCACAAGAACCCAGAGCGGTACACTTGCTTAAACTGCAACAGAACATTCACGAACAAACCAAATTTGAACGAGCATCAGAAAAAATACAGACACGTTGGTTACAGACAATTGGTAGTAAATGTTGAAACGGATGAGGATAACAATCAGACGCAGAAGGTTACAAAACAAAAGCGAAAATGCACTGTCTGCAGAAAATTGATAAGAGATACAGATCCTAATGCCATTAACGATCCAGCAATGTGCGCCTCCTGCGAAGACGCCAGTGCATATGTGATGGTCGACGGGGAAGGGGCGAAAGTGATATCACAGCGACGGTATCACTGTCTAAAATGTCGCAAGCACTTTATGCGCCAGGACAGACTCGAGTTCCACGAGATGCGACATAACGAGAACACGGACGAGTTTATCTGCAGCACGTGCGGTAAGGATTTCAGCGGGGAAAATGCTTTGTACGAGCATTATATCTTCGTGCATAAAGGGATTAGACCGCATATTTGCGAGGTTTGCGGCAAGTCGTTTCAACTGAAGGCGCGACTGAAGGAACACCTTCGGAAACACACGGGTGAGAAGCCTTATCAATGTGAGAGGTGCGGCCTGCGCTGCATGACTACGCACGCACTGAAATTCCACATGAAGTCTCATGTCTCCACTCGCCACACTTGCGAGATATGTGGCAAAGCGTTCATCAAGAAGCAGAATTTGAATGAACATCTGGAGAAGCACTGGAAGAAAGATAAGAACATAGCACTCTCGCGAATATTCACGTGTCCCGTGTGCAACTGCGAGTTACCGACCTTCCGTATGTTGAAGCATCACGTGATTGGAAGCCATCAACTCGACCGTCAAGACCCCTTAGTAATGAAACAAAAACCATTGTACGAATGTAACGAGTGTCAGGAGAAGTTCAAACATCAAATGTCGCTCAAGGCGCACAAAGAGAAGGTGCACGAGGGCAAAACTGTCCCTCGTGTATTTCAGTGTGATTTATGTAAAGCCCCATACAAAGTCAAACAGATGCTAATAAATCACATTAAGAGCAAGCACGAGGAAAAACAGTACAAATGTGCGAAATGCGATACGATGTTCGCGGGTATGAAAACCCTGTACCGTCACGTTTCACTATACCATAATACGAAACAGATCATCCGCAACGTGAACTTCAGACGAAGGGATACCGGAGATCCTCAGCGCCGTGAAGACACGAACAATCAGCCTTACCAGTGCACGGATTGCAACAAATCGTTCGGTAGCTATACCGGTCGCTCAAACCATCGCAGGAAGATACACGGGGACAACCAAACTAAGTGTTTGGAATGCGGAAAAAAATATGGCGATCTGCAAATCAGAATTCACCTGAACGATCATCTCGGCGAACAATTGAGACAATGTAAATTAGAATCCACGTAA
- Protein Sequence
- MDDTCRLCSIKLDIEYSKYIFDEATNLAQIINETLPIKVSQDDHSKSKHICLDCYNKVISHYEFVQNVLACSKESKTKINSFFEVNRNEKLENVVISKLQSDMICTCPNCNKDLILLLKNNSEDSNYAFDILLTVVDQIEKVESVEENVQIFEDTMEFVNVSTQNSSTDSKLHELSLNHNIVEEDVTNDNKQDINGIHRSSKSDTSHTNLIITLQKTDVPCEPSKGTKRKYQVGVSTETSINPIKLQKLQARLDAIKQDVDELNGDHDRLNVTSLLTFQSVNNDVVCLNEEIENEEENCTEYTMRGKHFDENLTESKTLKTKLDATEQNELTNDYDRSSLAGLITFQPESNDTECFSCDAETQEDSTRDVTKTERACINEDEPNDIDIPKSHLKHMCNLCGVRYNSQLKYKFHMDRHKFNKINKYVCLICSKETKNENLLWEHYIHMHKNPERYTCLNCNRTFTNKPNLNEHQKKYRHVGYRQLVVNVETDEDNNQTQKVTKQKRKCTVCRKLIRDTDPNAINDPAMCASCEDASAYVMVDGEGAKVISQRRYHCLKCRKHFMRQDRLEFHEMRHNENTDEFICSTCGKDFSGENALYEHYIFVHKGIRPHICEVCGKSFQLKARLKEHLRKHTGEKPYQCERCGLRCMTTHALKFHMKSHVSTRHTCEICGKAFIKKQNLNEHLEKHWKKDKNIALSRIFTCPVCNCELPTFRMLKHHVIGSHQLDRQDPLVMKQKPLYECNECQEKFKHQMSLKAHKEKVHEGKTVPRVFQCDLCKAPYKVKQMLINHIKSKHEEKQYKCAKCDTMFAGMKTLYRHVSLYHNTKQIIRNVNFRRRDTGDPQRREDTNNQPYQCTDCNKSFGSYTGRSNHRRKIHGDNQTKCLECGKKYGDLQIRIHLNDHLGEQLRQCKLEST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01409486;
- 90% Identity
- iTF_01409486;
- 80% Identity
- -