Basic Information

Insect: Temnothorax americanus
Gene Symbol: -
Assembly: GCA_030770215.1
Location: JASTWO010000135.1:70542-72494[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.011 1.6 10.4 0.2 1 23 243 266 243 266 0.92

2 10 7.6e-06 0.0012 20.3 3.3 1 23 272 294 272 294 0.99

3 10 5.2e-07 8e-05 24.0 0.5 1 23 300 322 300 322 0.99

4 10 0.3 46 5.9 5.2 1 23 328 350 328 350 0.97

5 10 8.6e-06 0.0013 20.2 0.3 1 20 356 375 356 376 0.96

6 10 0.017 2.6 9.8 2.4 1 23 385 405 385 405 0.94

7 10 1.4e-06 0.00021 22.7 0.5 3 23 413 433 412 433 0.98

8 10 0.00014 0.021 16.4 1.4 1 23 439 461 439 461 0.98

9 10 0.00054 0.084 14.5 4.3 1 21 467 487 467 490 0.96

10 10 0.067 10 7.9 4.0 3 23 498 519 496 519 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.011	1.6	10.4	0.2	1	23	243	266	243	266	0.92
2	10	7.6e-06	0.0012	20.3	3.3	1	23	272	294	272	294	0.99
3	10	5.2e-07	8e-05	24.0	0.5	1	23	300	322	300	322	0.99
4	10	0.3	46	5.9	5.2	1	23	328	350	328	350	0.97
5	10	8.6e-06	0.0013	20.2	0.3	1	20	356	375	356	376	0.96
6	10	0.017	2.6	9.8	2.4	1	23	385	405	385	405	0.94
7	10	1.4e-06	0.00021	22.7	0.5	3	23	413	433	412	433	0.98
8	10	0.00014	0.021	16.4	1.4	1	23	439	461	439	461	0.98
9	10	0.00054	0.084	14.5	4.3	1	21	467	487	467	490	0.96
10	10	0.067	10	7.9	4.0	3	23	498	519	496	519	0.97

Sequence Information

Coding Sequence: ATGATTAGCATGCAGGACTATTTTGAACAGCTAATCTTAAACAATCTAACTGGATCCGAGCAACCGCAGGAGGAAGTTCAGCTGACCGAATTGCGGCCGGTGAAACAATCGCGCATCAGAGAAAATGTCAAGGATACGGACGCGACCGACGCTCTGAGAGCGCTCAGGAGTTTTTCGGGCGACTGCGACGATGGCGAAAGCATTGATCAGCGAGAGTTCAATTCCTGCAAGAGCGTCGAGCAATCGGAATACCAGGGTGGCAAGCTTCAACGAGTGGAGGCTCATCGGAAAAGAACGGAAGACATCAGGAACACTGGTAAAATCGGTAATGAGGTGACGGTAGAGCTAGTATGTAATGACGAGAAGATCGCACACGTGAAAGCACCGAGGAGGAAGCTGGTGAAGTCGAGCAAGAAAGACCGAGAAAAGCCAGACGATATTACTGAAAGAGATGGTATTACTGAAAAAGAGAATCCCGAAAAGGAGCTCAGATTAAGGATCGACGCCATCATTCAAGCGAATTACTTACTGGAGCGCGAGAACGTTGTCGAGGAACTCGAAATTGTGGAGCATACTGACACTCCCTCCGCTGCCGCCTCGACAAAAGCCTGTGTGAAAAACGCAGAGAATAGCGATAGCTCCGTGTGTAATTCGGTGGAAGAAGAGGAGACGACGAGGAAGACGAGGAATCGGACCTATAAGATCAAACAGGATCTACAGAAGAAGTATTTCTGCATCATATGCGACGCGCGCTTCAAAGGTAGCGGTGGTCTGCGGAATCACTACAAAGTGGTGCACGACACTGGACCGGTGTTCAAGTGCCACGACTGCGGCAAGGAGTTTAAGCTGAAGGAGCGATTGAAGCTGCACGTGCGCATGCACACCGGCTTCAAGCCGTACAAGTGTTCGGACTGCGACAAGGCGTTCGCGCGGGGTGGCCAGCTGTTGCAGCATCGTCGCACGCACACCCAGGTCAGACCGTTCCACTGCGAGCTGTGCTCCACCACCTTCACGTGCATGGCCAATCTGTCGCTACATCTGAAACGTCACACCGGCCAGAAGGATCACAAGTGCGACCTGTGCGGACGCGCCTTCGTGCGTCGCGACGCTCTGAAAAAACATCTGGAGTGCCTGCACCGCGACGTCAAGTCCTTCCTCTGCGGGATCTGCAACAAGACCTTCAAGGGTCACCTGCCGCAGCACATGAGGACACACGCGAAGGACCGTCCGCACGGCTGTGCCACGTGCGGCCAGCGATTCGCCCAGAAGTCCCAGCTGACCGTGCACCAGAGGACCCATTCCGGCCAGCGACCATTTCGCTGCCTGGTCTGCTGGCAGGCCTTCGCCCATTCGACCGCCCTAAAGCTGCACACCCGACGACACACCGGAGAACGGCCGTTCAAGTGCACCGACTGCAATACCGGTTTCACTCAACTGCCACATTGGAAGAAGCATATGAAGTGCGTACACGGCAGAGACAATCCGTATGGCTGCAAGCGTTGCAAGAACTTTTTCAGAATTAAGAGCGATCTGGAGAACCACGAAAAGACTTGTCATCCAGAGGCTGAGGAGGAGGATGACGATGGCAACGTTTCCAGTAAACCGGCCGGCGGCTCCGAGATCGTCGAGAAGACCTCTGTCACCGCGAAGTACAAGATGATGACGGTGGAGAAGATGCGGCTGCTGCTGGCGGTTCTCCTGAAGAGGATCAGTAGGCAGGAACGGTTGGACGAGCTCGGCTTCGGCAAACGTCTCATCGACGACGTTCTTCAGGACTCCCTGGTGTCGGCTGGCAAGGAACCGGTCACGGGAAGCGGCTTGTCCGAACTTGAGGCTCTCACTCGGAATCTAGAAATCTTCCTGGAATGGACAGTGCCGAAGGAGCACTTGGAGACTTTTCGTAAAATGAAGAAGTCACCCGAAGATATTTTGGAAACGCTCACAGCTACGTAA
Protein Sequence: MISMQDYFEQLILNNLTGSEQPQEEVQLTELRPVKQSRIRENVKDTDATDALRALRSFSGDCDDGESIDQREFNSCKSVEQSEYQGGKLQRVEAHRKRTEDIRNTGKIGNEVTVELVCNDEKIAHVKAPRRKLVKSSKKDREKPDDITERDGITEKENPEKELRLRIDAIIQANYLLERENVVEELEIVEHTDTPSAAASTKACVKNAENSDSSVCNSVEEEETTRKTRNRTYKIKQDLQKKYFCIICDARFKGSGGLRNHYKVVHDTGPVFKCHDCGKEFKLKERLKLHVRMHTGFKPYKCSDCDKAFARGGQLLQHRRTHTQVRPFHCELCSTTFTCMANLSLHLKRHTGQKDHKCDLCGRAFVRRDALKKHLECLHRDVKSFLCGICNKTFKGHLPQHMRTHAKDRPHGCATCGQRFAQKSQLTVHQRTHSGQRPFRCLVCWQAFAHSTALKLHTRRHTGERPFKCTDCNTGFTQLPHWKKHMKCVHGRDNPYGCKRCKNFFRIKSDLENHEKTCHPEAEEEDDDGNVSSKPAGGSEIVEKTSVTAKYKMMTVEKMRLLLAVLLKRISRQERLDELGFGKRLIDDVLQDSLVSAGKEPVTGSGLSELEALTRNLEIFLEWTVPKEHLETFRKMKKSPEDILETLTAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01409430;
90% Identity: iTF_01408509;
80% Identity: -