Tame002113.1
Basic Information
- Insect
- Temnothorax americanus
- Gene Symbol
- -
- Assembly
- GCA_030770215.1
- Location
- JASTWO010000018.1:693611-696367[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 8.5e-05 0.013 17.0 4.3 1 23 262 284 262 284 0.99 2 12 0.15 23 6.8 4.5 1 23 289 311 289 311 0.97 3 12 3.6e-05 0.0055 18.2 1.1 2 23 321 342 320 342 0.97 4 12 1.3e-05 0.0019 19.6 4.6 1 23 435 457 435 457 0.98 5 12 0.00024 0.038 15.6 1.3 1 22 462 483 462 486 0.91 6 12 3.8e-06 0.00059 21.3 0.7 1 23 525 548 525 548 0.96 7 12 1.6e-05 0.0025 19.3 2.4 1 23 579 601 579 601 0.99 8 12 0.00019 0.03 15.9 4.0 1 23 615 637 615 637 0.96 9 12 0.00018 0.028 16.0 4.7 1 23 643 665 643 665 0.98 10 12 0.00032 0.049 15.2 3.1 1 23 671 693 671 693 0.98 11 12 5.5e-05 0.0085 17.6 6.5 1 23 699 721 699 721 0.98 12 12 0.00026 0.039 15.5 0.3 1 21 727 747 727 748 0.93
Sequence Information
- Coding Sequence
- ATGCAGATCGACAGCGGGATGTTGACGCGGATGAATCCGGACACCAGCCTCTGCCGCGTCTGCCTGACCGTCGACCACAACAACCAGTGCGTCTTCCGCAGGAACTGGGACGGTCCCGACGACTCCTCCTCTGGGCTGTCGGAGAAGCTGCAGTTATGCTGCGGTGTGGAGGTCCTGGAAGACGACGGCCTGCCCGCTAACATCTGCCTCGAGTGCGCGATAAAAGTCAACATCGCCTACGAATTGAGGAAACAATGTCAGAAAGCGGACGTTGAACTCAGGAAGCTGTACGGGAAAGCCTCGAGGACAGACGTCGCCGGCAACCGCATTCCTACAAAAGATCAATGTTGTCAAACTGAGCAATCTCTTATCTTGGGTGCAATCAATTTGGAAGATAATACAGAGCTAAGTGTGGACAGTGAAGTTAACATAGAGAAGAATACCGTGCAATCAAACGTCATGAGACAAGGACAAATACCGGACGCTTTCGAACAAATCAAGCAGGGCGTTCTAGTAGACAGCGAAATGGATTTGGACTGCGGTAGTAGATATAAACAGGTAGAACATGACAAAATAGCTAAAAAGGATCTTTATAGAACGAGGAGATTAGCTATGTTTAAAAGGGTCACGTCTATGgaaaatttgaagaattacAAGGAGAGACAGAGACGATTTATCAAGAAGAGCGCGAACGTCAAACGCGAGAGCAGCGACGGCGAGTATCAGACGAAGGCGAGAAACGCCCACGGCAGGATGGAGAGAACGTCCGAGCTcgaattacaatataaatgtCAGAAATGTGATAGATTTTATTCCAGTAAGAAGTCTTTAGACAGACACACGTCGACCCATAACGATAAAGAGTTCAAATGCGATAGCTGTGATAAGCAATTCTTCTGTCTGGATAAATTACGTAAGCACGTTAATCTGCACAGAACGAAGGAGAAGCCGAAGCCGGTGTCGTGCAAGATCTGCAACAAGAGTTTCAGAAAGATCGACACCATGGTCAGGCACCTGAATACTCACAAGAAGGCCTATCCCAAGGATGTTTTTTCCATCCTGAAAGAGATACGGGACAAGAGAAAGTTGGAAAATAATCCAGAGTCCTTTGAGACGCCACTTACGATGAACGAGGACGAAGAAACACAGGCGCACGACGGTCAGTTACACAGTGAGAACGACGGCACGACGAGGGAGCTGAGAAAACGTAACAATGCAAGAGTGGAACAAAGAGACTCGGATATGATGAATAGCGACTCCAGCGATGATAAAACCGAGATGACGTTCGACGACGCGTCGCTCTTCCGCTGCAAACACTGCAGCAAGAGTTATCGTACCGAGAGGTCGCTCCAACGTCATCTGCTGGTGCACGACGAGAAGAAGTACGTCTGCAACGTCTGCAACATGAAGTTCTTCCGGCAGGACAGGCTCAAGAGCCACATGGATCGGTACGGTCACGACGAAACCAAGGCGTGCCCGGAGCCGCAAAAGCCGCCGGACGACAAGTCGGCCATCAAGCTGATAAACACCTGGATAAGAGAGGAGCTGGATTCCGATAACGAGGGCAAGGGCTTCCCGTGCGGGGTCTGCGGAAAGTCGTACGACACGAAGAAGTCCTTGATGAAGCATCAGATGAACACGCACGGCGGACAGGATGAGGACTGCGCGAGCTGCGGTACCGTGTGCAATTGCGCGTACAAGGATCAGGAGAAGAGCAACGAGAAGTCGAAGCCGTACACCTGCGAGGAGTGTAACAAGTCGTTCGAGAAGGAGATCAAGCTGCACAGGCATCTGCGAATTCACGAGCGCGCCAAGGAGCAGCAGGACGCCAACTTCAAGCGTTTCCTCTGCCACATATGCAGCAAGACGTTCCGCCAGAACACCGGCCTCATGTTCCACATGAGGACGCACACGGGCTACAAGCCGCACGTGTGCAAGTACTGCGGCCGCGGCTTCACCTCCAACTCGAACTGCATCAATCACGAGAGGACTCACACGGGCGACCGGCCGTTCGTCTGCCATTACTGCAGCGCCGCGTTCGCGAAATCGTGCACCCTCAAGGCCCACATCACCACGCACACCGGCGAGGCGAACTATCACTGCAAGACCTGCGGCAAGTCGTTCCGTCGACTCAAGTACTTGAAGGAGCACCGATTCACGCACACGGGCGAGAAGCCGTACGCGTGCAAGATCTGCGGCACCGCGTACAGCCACTCCGGCAGTCTGTTCGTTCACGAGAAGAAGTGCAAGGCCCAGTACAATAATTATCAGCCGGGGCTCCCGCAAAACGCGCAACAGCAGGTTCCCTACGGTCAATCTCCGCAGACCACCGGCGCGGGCATTTCCATGACGTCCACTTCATCGGTAGTCGCTCCTATCATCGCTACGCTGCCTCAGGCTCACCTAAATGTCATCAACAGCACTCTGAATGTACAGCCGAACAAGGGCTACGTGGACAATGTTCAGCGAATGAACGCGCACGCGGCGGCTAACGCGACCACGGTCGTCTCCGCGTCGGGTCTGCATCCGAATGTCGACATCGCCGACATGAGTTCCGCCGTGAGGAACTTCTCTATCATCGGCCAGATGTTTCACACTTAG
- Protein Sequence
- MQIDSGMLTRMNPDTSLCRVCLTVDHNNQCVFRRNWDGPDDSSSGLSEKLQLCCGVEVLEDDGLPANICLECAIKVNIAYELRKQCQKADVELRKLYGKASRTDVAGNRIPTKDQCCQTEQSLILGAINLEDNTELSVDSEVNIEKNTVQSNVMRQGQIPDAFEQIKQGVLVDSEMDLDCGSRYKQVEHDKIAKKDLYRTRRLAMFKRVTSMENLKNYKERQRRFIKKSANVKRESSDGEYQTKARNAHGRMERTSELELQYKCQKCDRFYSSKKSLDRHTSTHNDKEFKCDSCDKQFFCLDKLRKHVNLHRTKEKPKPVSCKICNKSFRKIDTMVRHLNTHKKAYPKDVFSILKEIRDKRKLENNPESFETPLTMNEDEETQAHDGQLHSENDGTTRELRKRNNARVEQRDSDMMNSDSSDDKTEMTFDDASLFRCKHCSKSYRTERSLQRHLLVHDEKKYVCNVCNMKFFRQDRLKSHMDRYGHDETKACPEPQKPPDDKSAIKLINTWIREELDSDNEGKGFPCGVCGKSYDTKKSLMKHQMNTHGGQDEDCASCGTVCNCAYKDQEKSNEKSKPYTCEECNKSFEKEIKLHRHLRIHERAKEQQDANFKRFLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKYCGRGFTSNSNCINHERTHTGDRPFVCHYCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHRFTHTGEKPYACKICGTAYSHSGSLFVHEKKCKAQYNNYQPGLPQNAQQQVPYGQSPQTTGAGISMTSTSSVVAPIIATLPQAHLNVINSTLNVQPNKGYVDNVQRMNAHAAANATTVVSASGLHPNVDIADMSSAVRNFSIIGQMFHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00765856;
- 90% Identity
- iTF_00765856;
- 80% Identity
- -