Basic Information

Insect: Temnothorax americanus
Gene Symbol: -
Assembly: GCA_030770215.1
Location: JASTWO010000024.1:374368-385616[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 6e-05 0.0092 17.5 1.4 1 23 455 477 455 477 0.96

2 18 2.1e-05 0.0033 18.9 1.9 1 20 483 502 483 505 0.94

3 18 1.5e-05 0.0023 19.4 1.4 1 23 511 533 511 533 0.98

4 18 8.6e-05 0.013 17.0 4.4 1 21 539 559 539 561 0.95

5 18 1.2e-05 0.0018 19.8 5.6 1 23 567 589 567 589 0.99

6 18 2.7e-05 0.0041 18.6 5.3 1 23 595 617 595 617 0.97

7 18 0.0001 0.015 16.8 6.9 1 23 623 645 623 645 0.96

8 18 9.9e-08 1.5e-05 26.3 2.7 1 23 651 673 651 673 0.98

9 18 7.3e-05 0.011 17.2 6.7 1 23 679 701 679 701 0.97

10 18 2.3e-05 0.0035 18.8 5.8 1 23 707 729 707 729 0.98

11 18 4.7e-07 7.2e-05 24.1 2.8 1 23 735 757 735 757 0.98

12 18 8.9e-06 0.0014 20.1 7.8 1 23 763 785 763 785 0.98

13 18 2.8e-05 0.0043 18.5 9.1 1 23 791 813 791 813 0.98

14 18 3.7e-05 0.0057 18.2 7.5 1 23 819 841 819 841 0.98

15 18 0.0018 0.27 12.9 8.8 1 21 847 867 847 869 0.94

16 18 1.4e-05 0.0021 19.5 0.4 1 23 875 897 875 897 0.98

17 18 0.032 5 8.9 4.5 1 23 907 929 907 929 0.98

18 18 5.2e-07 8e-05 24.0 1.3 1 23 935 957 935 957 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	6e-05	0.0092	17.5	1.4	1	23	455	477	455	477	0.96
2	18	2.1e-05	0.0033	18.9	1.9	1	20	483	502	483	505	0.94
3	18	1.5e-05	0.0023	19.4	1.4	1	23	511	533	511	533	0.98
4	18	8.6e-05	0.013	17.0	4.4	1	21	539	559	539	561	0.95
5	18	1.2e-05	0.0018	19.8	5.6	1	23	567	589	567	589	0.99
6	18	2.7e-05	0.0041	18.6	5.3	1	23	595	617	595	617	0.97
7	18	0.0001	0.015	16.8	6.9	1	23	623	645	623	645	0.96
8	18	9.9e-08	1.5e-05	26.3	2.7	1	23	651	673	651	673	0.98
9	18	7.3e-05	0.011	17.2	6.7	1	23	679	701	679	701	0.97
10	18	2.3e-05	0.0035	18.8	5.8	1	23	707	729	707	729	0.98
11	18	4.7e-07	7.2e-05	24.1	2.8	1	23	735	757	735	757	0.98
12	18	8.9e-06	0.0014	20.1	7.8	1	23	763	785	763	785	0.98
13	18	2.8e-05	0.0043	18.5	9.1	1	23	791	813	791	813	0.98
14	18	3.7e-05	0.0057	18.2	7.5	1	23	819	841	819	841	0.98
15	18	0.0018	0.27	12.9	8.8	1	21	847	867	847	869	0.94
16	18	1.4e-05	0.0021	19.5	0.4	1	23	875	897	875	897	0.98
17	18	0.032	5	8.9	4.5	1	23	907	929	907	929	0.98
18	18	5.2e-07	8e-05	24.0	1.3	1	23	935	957	935	957	0.97

Sequence Information

Coding Sequence: ATGAATAGTGAGCAGCATGCATTGCCAGCGACTACGCAGGCACAACAAGAGGATGTAAACGCGGGTCAAAGTGGTCGTCCTTCATACCCAGGTGGTTTGGCTACTGCGACCGCGAGTCTTGGCAATGTAGGGAGTACTCCCCATTCATCCGCGGACCTGCGTGTAGGTACTGCCGTAGCGTTAGCCTCCTCGGTAGCCTCCTCGGTAGCTAAGTATTGGGTCCTCACCAATCTGTTTCCTCCCGGACCGCTACCTCAAGTCTCGGTCTACCACCATTCCCACCACAACTCCTCGCATAGGAGTGGTGGCGGTGGGGAGGCATCATCCTCCAAAGAGCCAGCCTCTTCACTGAACCAGGAAATGGCGTTGACTTCCAGCTCGCATCATCAGCAACAGTCAACAGCCGCgcatcatcatcatcagcCTTCAgttagcagcagcagcagccaCCACAGTTCCCTGCAGTCGAATCCACAGATTCCTGTGTCTCTTCCTGGCCTTAATTTAGACGGCGCACATATACCAGCGAGTGTCAGTCATCTGGCTGCGCATGCACAAATGCAACAACAAATGCAGGCGCAAGCACAGCAGCAGCTGCatcagcagcaacagcagcagccgcagcaacagcagcagcagtcTCATCATCAGATGCCGAATCATCAGAACGCTCAGAACAATGGGCCGACGGCGCATAGCCAGAACGCGCAGCGAGACGACAACAAAGTCAAAGACGAGGGCGGTAGTTGCACCACCGAGCGTTGCAGCGACAATCAGGTTCATTGTCAAGTTCAATGCGATCTGCAGTTACAACCACCCCAAGATCTTCAACAAAGCTTGatgcaacagcagcaacaacagcagcagcagcagcaacagatCGGGGTCAACATCAGCGGTAACTCCACTACCGAGGGAGGAAGCCAGAACAACTCCGAGAAAcccgagaaagagaaggagttGCGGCAATTGAACATGACCCAatttcaAGTCCCTGACTTGAAACCAGGGGGACACATGATGGACGTGAGGACAGCAGACGGATCGGTTGTCAAAATCAGCGCAGGAAACGAGCAAGATTTAGCCAAGACTCTCGGCGTCGAAATGGTACAAAATATGTACAAGGTCAATGTGGAAGATATTAACCAACTGTTGGCGTATCACGAGGTTTTTGGAAAGCTGCAGAGCGAGATTGCAGCTGGAACGACTTTAGTGGGCAGCACTGTGCCTACACAGACAGTTACCACGATACAGAATGGCACGCCAATCGTGCAGCAGGTCCAATTGAACAAATTCGATATAAAGTCGAGCGACGGCGAAGCAACGCCTGGCCCGAGCGCATCGCCCGTGTCGGTTGGCAGCCACGCTTGCGAGATATGCGGAAAGATCTTCCAGTTTCGTTATCAGCTTATTGTACATCGCAGATATCATACCGAGAGAAAGCCATTCACGTGTCAGGTATGCGGCAAAGCGTTCTCAAATGCGAACGATCTAACGCGTCACGGCAAATGTCATCTAGGAGGATCCATGTTCACCTGCACCGTTTGCTTTCACGTCTTTGCGAATGCGCCTTCGCTGGAACGTCATATGAAGAGACATGCCACCGACAAACCGTACAATTGCACGGTCTGCGGTAAGAGTTTCGCGCGCAAAGAGCATTTGGATAACCACACGAGATGTCATACTGGCGAGACGCCATATAGATGTCAATACTGTTCGAAGACATTTACCCGAAAAGAACATATGGTAAATCACGTTCGCAAACACACTGGTGAGACTCCACATCGATGTGATATTTGCAAGAAGAGCTTTACTCGCAAAGAACATTTTATGAACCATGTTATGTGGCATACAGGAGAAACCCCTCATCATTGCCAAGCTTGCGGCAAGAAGTATACGCGCAAAGAGCATCTCGCTAACCATATGCGTTCGCACACAAACGACACGCCGTTCCGTTGCGAAATATGCGGTAAGTCGTTTACGAGGAAGGAGCACTTCACGAACCACATAATGTGGCATACGGGCGAGACGCCGCACCGCTGTGACTTCTGCTCGAAGACGTTCACGCGAAAGGAACACCTCCTGAACCACGTTCGCCAGCACACGGGTGAGTCTCCACACCGATGCGGCTTCTGCTCCAAATCGTTCACCAGAAAGGAACACCTTGTTAACCACATCCGCCAACACACAGGGGAGACGCCCTTCCGCTGTTCATACTGTCCGAAAGCATTTACGCGGAAGGATCACCTGGTGAACCACGTCAGGCAGCACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACCAAATCCTTCACGCGGAAGGAACATTTGACCAATCACGTGCGTCAACACACAGGCGAATCGCCACACCGATGCCACTTCTGCTCCAAGTCATTTACTCGTAAGGAGCATTTGACGAATCATGTGCGCATCCACACTGGCGAATCTCCACATAGGTGTGAGTTTTGCCAGAGGACGTTCACTAGGAAAGAACATCTAAATAATCATCTCCGTCAACATACCGGAGATTCTTCACACTGTTGCAACGTATGCTCCAAACCATTCACAAGAAAGGAGCATCTCGTGAATCATATGCGTTGCCATACCGGTGAACGTCCGTTCGTGTGCACAGAATGTGGCAAGAGTTTCCCGCTGAAGGGCAATCTCCTCTTCCATATGCGCTCGCACAACAAGGGCAGCAACGCCGAGAGGCCGTTCCGCTGCGACCTGTGCCCCAAAGATTTCATGTGCAAAGGACACTTAGTCTCGCACCGGCGCTCGCATTCAGACGAGCGGCCGCACAGTTGCCCGGATTGCGGCAAGACCTTCGTCGAGAAGGGCAACATGCTGCGACACTTGCGCAAACACGCGGCCGAAGGCCCACCGACACAAGTTAGCACACCGTCAGCTATACCGCAATCCGGTGTCCTGCCGATACCGGCAGCGGCGGCAGTCCTGGTTGGACATCCATTAGCACCGCCGGCGCCGCCTGTTGTGCCGCAACATACGGTGGTCGTGCCGACACCGCCCGGTGTCGGATTGGCGTCGTACTAG
Protein Sequence: MNSEQHALPATTQAQQEDVNAGQSGRPSYPGGLATATASLGNVGSTPHSSADLRVGTAVALASSVASSVAKYWVLTNLFPPGPLPQVSVYHHSHHNSSHRSGGGGEASSSKEPASSLNQEMALTSSSHHQQQSTAAHHHHQPSVSSSSSHHSSLQSNPQIPVSLPGLNLDGAHIPASVSHLAAHAQMQQQMQAQAQQQLHQQQQQQPQQQQQQSHHQMPNHQNAQNNGPTAHSQNAQRDDNKVKDEGGSCTTERCSDNQVHCQVQCDLQLQPPQDLQQSLMQQQQQQQQQQQQIGVNISGNSTTEGGSQNNSEKPEKEKELRQLNMTQFQVPDLKPGGHMMDVRTADGSVVKISAGNEQDLAKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQSEIAAGTTLVGSTVPTQTVTTIQNGTPIVQQVQLNKFDIKSSDGEATPGPSASPVSVGSHACEICGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFSNANDLTRHGKCHLGGSMFTCTVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCSKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQACGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLVNHIRQHTGETPFRCSYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCSKPFTRKEHLVNHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSNAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHAAEGPPTQVSTPSAIPQSGVLPIPAAAAVLVGHPLAPPAPPVVPQHTVVVPTPPGVGLASY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00899003;
90% Identity: iTF_00014883;
80% Identity: iTF_01407566;