Tame028401.1
Basic Information
- Insect
- Temnothorax americanus
- Gene Symbol
- -
- Assembly
- GCA_030770215.1
- Location
- JASTWO010000595.1:18147-19898[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.3e-08 7.4e-05 23.5 0.0 3 39 33 68 31 74 0.87 2 2 4.8 1.1e+04 -2.6 0.0 12 20 101 109 98 117 0.67
Sequence Information
- Coding Sequence
- ATGGCTACTATGGGATTGAAAATTGGGTTTTATGAGGTTCTATTGGTGCTTCTAATTAATGAACCACGAAAAACCGAAAGAGGAAAATGGTCCTCAGACGAGCTCAGAGCAGCTATCGGGGCAGTAAAAGCTGGAATTCCCATTCGTCAGGCTGCGACTGCATCGAACATTCCCTTCAGCACTATCCAGCAGAGACTCAAGACCGGAGACAATTCCTCAGAGCCAAGAATGGGTCGAAAGCCTGTTTTTACAGCAGCCCAAGAAGCTGCGTTGGCTGATACTTTAATAAAGTTAGCGAAAGTGTTTTACGGACAGACATCTCTTCAAGTGCGCTGCGCAACATTTGACGTGAGGAAACCAGAGGCAACAAGCCTCAATCGTGTGACTGCATTCAATCCGGAGGCTGTAAAAATGTTCTTTGATAACCTGAGGATCGTGATGGACAAATATAACTTCTCGCCATCCCAAATTTGGAATATGGACGAAACAGGAATTACAACATTCCAACAGCCCCAAAATGTGATCGCTGCAAAAGGTCAGGTGCTATGA
- Protein Sequence
- MATMGLKIGFYEVLLVLLINEPRKTERGKWSSDELRAAIGAVKAGIPIRQAATASNIPFSTIQQRLKTGDNSSEPRMGRKPVFTAAQEAALADTLIKLAKVFYGQTSLQVRCATFDVRKPEATSLNRVTAFNPEAVKMFFDNLRIVMDKYNFSPSQIWNMDETGITTFQQPQNVIAAKGQVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -