Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 1.8e-07 0.0004 21.2 0.0 2 39 15 51 14 55 0.92

2 3 2e-10 4.4e-07 30.6 0.0 2 39 69 106 68 111 0.93

3 3 1.7 3.8e+03 -1.2 0.0 14 25 109 120 104 120 0.73

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	1.8e-07	0.0004	21.2	2	39	15	51	14	55	0.92
2	3	2e-10	4.4e-07	30.6	2	39	69	106	68	111	0.93
3	3	1.7	3.8e+03	-1.2	14	25	109	120	104	120	0.73

Coding Sequence: atggCACGAAATTACAAAAGAACTGAACACTGGAAATGGTCTAAGGAAAGCATGGTTGCAGCAACGGAAGATGTTATGAAGGGAATAAGCTGCAGAGAAGCTGCTGAAACCCATAAAGttcctttttctattttaagaTATAGGATACAAAAAGCTGAAAGGGAAGGTTTGTCTCCTGCCCCGAAAAAGAAGAACTGCTGGTCTAAGGAAAGAATGGCTGCAGCAATCGAAGATGTTAATAAGGGAAAAATGAACACACCAAAAGCTGCTGCTTTCCATAAGGTTCCTTATCGTACTTTGATTCGTAGAATAAACGAAGTTGAAAGGGAAGGTCTTTCTCTTTTAGAAGCTGCCTCGAAAAGGGTAGGCCGTAAAACTTTCTCAGAGGCTCAGGAAGAGGAACTTGTGCAACAcatattgcattttaaaaaaagtttatttggCCTCACTTCAACAGATATAGGGAAACTCGCATTTGAATTTGCTGAAGAGAACAACATTCCACATATGTTCAACAAGGAAGAAAAAAACCAGGGAAACATTGGATCTACCGTTTTCTCAGCAGGCATAAGCAATTATCGCAACAGAATTTTGAAGAAACATCTCCTGCAAGCGCGAAAGACTCTAACCGTACAGCAGTTCAATcattttttgatttattaG
Protein Sequence: MARNYKRTEHWKWSKESMVAATEDVMKGISCREAAETHKVPFSILRYRIQKAEREGLSPAPKKKNCWSKERMAAAIEDVNKGKMNTPKAAAFHKVPYRTLIRRINEVEREGLSLLEAASKRVGRKTFSEAQEEELVQHILHFKKSLFGLTSTDIGKLAFEFAEENNIPHMFNKEEKNQGNIGSTVFSAGISNYRNRILKKHLLQARKTLTVQQFNHFLIY

Sequence clustering based on sequence similarity using MMseqs2