Tdal023166.1
Basic Information
- Insect
- Teleopsis dalmanni
- Gene Symbol
- -
- Assembly
- GCA_002237135.5
- Location
- CM026971.3:58127995-58150953[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 4.4 6.8e+02 2.4 0.4 3 23 321 342 319 342 0.89 2 15 5.8 8.9e+02 2.0 3.6 2 19 349 366 348 369 0.91 3 15 0.00041 0.064 15.0 0.6 1 23 376 399 376 399 0.97 4 15 6.8 1e+03 1.8 5.4 2 23 406 429 405 429 0.71 5 15 0.0076 1.2 11.1 0.0 1 20 439 458 439 459 0.95 6 15 0.0036 0.56 12.1 2.8 1 23 474 498 474 498 0.91 7 15 0.44 67 5.5 3.5 1 23 538 563 538 563 0.87 8 15 0.0027 0.41 12.5 0.2 2 22 567 587 567 587 0.94 9 15 0.0027 0.42 12.5 1.6 1 23 594 617 594 617 0.96 10 15 0.02 3.1 9.7 1.5 2 23 623 645 622 645 0.95 11 15 0.00011 0.017 16.8 2.7 2 23 649 671 648 671 0.96 12 15 0.0025 0.39 12.6 2.9 1 20 677 696 677 700 0.90 13 15 0.045 6.9 8.6 0.8 1 23 705 727 705 727 0.98 14 15 2.4e-06 0.00037 22.1 1.9 1 23 733 755 733 755 0.98 15 15 0.00053 0.082 14.7 0.4 3 23 763 789 761 789 0.85
Sequence Information
- Coding Sequence
- aTGGCGCTTTCGCTTTTAACACAATTTCCCAGTTTCTCggatttacaaacatttttcgaTACGACACATACAAATACCTATCAACAAAATCATAATCATCAACAagagcagcaacaacaacaacaataccaacaacaagaTCAATTCGATCAAATGGAATACAATAATCAAAGTCAATATCATCAAAACCATTTCACGAATACAAACCGAAACTATAACAGTGGTTATCATCATCAGCACATTAGTGCAGATTATGAAACTGTAATCAATTTCATAGACTCACCACCAAACTCAGAAGAATCTTGGACAGACGATCGTTCCAAAGGCTCACCCGGACCACAAATAATTGACGTTCAAACAATTTATTCCAATAACGGATCACGTAAAAGACGAATGGATTGGGATTCCTTAGATATCGATCAGAGTGGAAACACAGCAACAACAGCTCAAACGGATGAAATACCAAACAAGATAACAAGTCACGATAAAGAAAGACATAAAAGAGAAAAACTTGGTgATTCAGCATATAGTATGTTGCAATTGATAGAAGTACTAAGCATTGCTTGTGGCGTTCTTGCCTTCATAATAGTTTTCTTCTTATACATAGAATCACCCGTATTTTACTTAGTGCGTAACGAACGTCCATTTGTGACAATATATGAAACTTATCAACAACTGGAAGAACACAAAGCATATGTagcacataacaaaaaaatgtcacttGGAGTTAGTATAGTTTCTGGTTTACCAGCTCTATTGAAGCTGTGTATATATCGTGGTTTGGTTGCATTGAGTTATTCATATTTAACTACTTATGCTTTTCGCTTTGCTTCAAGTATGACTTATTCCGTTGAAGTGTGGACTTTTATATTCATGGGCCCTCTACGTATTCATAATAGATTATATTGGACGTATAAATTTCATTTGCAGTTTCATTTGATAAAGCATAGGCCCAAATGCTGCTTAATTTGTGGTTTGAACATAGCAGACGATAATGAATTATTTGAACATGTACAATATTTTCATGAACAATCGGATCAATTGACTTGCACttgTTGCGATCGCATATTTAAGGACAAGGAGCGGTTTGAAGCACATTGTAACACTCAAAAAtctaacttaaaatattattgcgaTTTCTGTCCAAAGAAATATGCCAATAAATCTATACTTGCAACGCATATGAAAATTTCTCACCTTGCGGGAAATCCAGTCTCCTGCACATATTGCAACAAACAATTTCCAAATTCTATTTGCcgttcatataaaaatcatataaaaaaccaTGAACTAATTGAATCGCAGGTACAAAGTTTTATCTGTACAACATGCGGTTTAATCACGAGGGACGAAGCCAACTTAAAtAATCACTTAACATGTAATAAACCGACGCTCGAAGAGGAAATAATCACATATGCATATACCTGTGAGTTCTGTTCATCGAATTTTAAGAGCGCTTACCATTTGCAGACGCATCGTGCAACTCGCATACATGACGACAATCTTTACCATTGTTTAACGTGTGAAGAAAACTTTACGTGTTATAAAAGCTTACGCACTCATGAAAAATATCATTCAGTTGATCAATGGAAATTAGCTCTGAGTAGAGTCTTTATGTGCGCTGTTAAGGGATGTGGAGAAACATATGTACAGTGGAGTGGGTATCATAGTCATAAAACTCATTGCCATTTAGAAGAGACATGCGTCACATGCAAAGAAACATTTAAGAACACTGAACAACTAGCAGAGCACATGGAAACATGTAGTAATACACGGGCTTTTACGtgtcaattttgtaaaaaagtttGTCCAACTAAAATGTCTTTAGCCGTACACGTTGCAAGAAGTCATAATAATAaaaatttgaaatgttcaatttgtaaaagtataattaaaaataaggcACTCCTCGAAAAGCATATGGACTCTTGCCACCAAGAAATGCGGTGTAATGAATgccataaaatattcaaaaatggaagaaatttggagaagcataaaaaaattgttcacgAGTCCATTAAACGTTATTTCTGCAAATCATGTGACAAAGGTTTCTACTATAAAAGTGAATTGAAACAACACAACacatttaTCCATAAGCCTTTCCTCTACGAATGCAATGaatgtttatttactacaaattataaaaactccTTTGATATACACATGGCTATGCATAGAGAACAATTACAACATAAATGTCCCATATGCAATAGAATGTTTGGACGAAAATATGccttaaatttacatataaagcgTCATTCGGATCATAAAGAatttatctgCTCACAACGTATCAAGGATGGCTGTGATGcatcatttatttcaaattacttATTACGAAAGCACATTAAGAGTAGACATTCTAACTATGAGTTACTACAGTTACCAAAACTCCAAAATAACCAAAGCATTTCAGAACTCGAATTACAAAATAGTATTGATGATGCTGATGATCCATTAAACGTTGTTAACGAATCACTTAACTATGCTGCTGATGTTGATAATCCACCACATGATTTTGACGACTTATTGAAAAATGTTGACGATGCACCAAACTGCACTGACAATATACCAATCATGGTTGTGGACTACGATGAAGCTAACGATATTGGGGAAAGTAATACCTATATTTCGTACATGATACTAGATGAAAATATACAAGAAAATCCAATAGAAGAGGTTTTTGCAGAAAATAATAGAACTGacattagtttaattaatattgtagaaGAGGATACGAGGgaaatagatatagatataattgAGGAAATAACTGACTAA
- Protein Sequence
- MALSLLTQFPSFSDLQTFFDTTHTNTYQQNHNHQQEQQQQQQYQQQDQFDQMEYNNQSQYHQNHFTNTNRNYNSGYHHQHISADYETVINFIDSPPNSEESWTDDRSKGSPGPQIIDVQTIYSNNGSRKRRMDWDSLDIDQSGNTATTAQTDEIPNKITSHDKERHKREKLGDSAYSMLQLIEVLSIACGVLAFIIVFFLYIESPVFYLVRNERPFVTIYETYQQLEEHKAYVAHNKKMSLGVSIVSGLPALLKLCIYRGLVALSYSYLTTYAFRFASSMTYSVEVWTFIFMGPLRIHNRLYWTYKFHLQFHLIKHRPKCCLICGLNIADDNELFEHVQYFHEQSDQLTCTCCDRIFKDKERFEAHCNTQKSNLKYYCDFCPKKYANKSILATHMKISHLAGNPVSCTYCNKQFPNSICRSYKNHIKNHELIESQVQSFICTTCGLITRDEANLNNHLTCNKPTLEEEIITYAYTCEFCSSNFKSAYHLQTHRATRIHDDNLYHCLTCEENFTCYKSLRTHEKYHSVDQWKLALSRVFMCAVKGCGETYVQWSGYHSHKTHCHLEETCVTCKETFKNTEQLAEHMETCSNTRAFTCQFCKKVCPTKMSLAVHVARSHNNKNLKCSICKSIIKNKALLEKHMDSCHQEMRCNECHKIFKNGRNLEKHKKIVHESIKRYFCKSCDKGFYYKSELKQHNTFIHKPFLYECNECLFTTNYKNSFDIHMAMHREQLQHKCPICNRMFGRKYALNLHIKRHSDHKEFICSQRIKDGCDASFISNYLLRKHIKSRHSNYELLQLPKLQNNQSISELELQNSIDDADDPLNVVNESLNYAADVDNPPHDFDDLLKNVDDAPNCTDNIPIMVVDYDEANDIGESNTYISYMILDENIQENPIEEVFAENNRTDISLINIVEEDTREIDIDIIEEITD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -