Tdal026824.1
Basic Information
- Insect
- Teleopsis dalmanni
- Gene Symbol
- -
- Assembly
- GCA_002237135.5
- Location
- CM026971.3:91798739-91805540[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 6.8 1e+03 1.8 4.9 1 23 259 289 259 289 0.76 2 13 0.0049 0.75 11.7 0.6 1 23 295 318 295 318 0.96 3 13 1.2e-05 0.0019 19.9 2.2 1 23 323 346 323 346 0.96 4 13 2.7e-05 0.0042 18.7 1.9 1 23 351 373 351 373 0.98 5 13 0.082 13 7.8 8.1 1 23 379 401 379 401 0.96 6 13 0.00082 0.13 14.1 5.1 3 23 410 431 409 431 0.95 7 13 0.046 7.2 8.6 0.3 1 23 437 460 437 460 0.94 8 13 0.028 4.4 9.3 0.3 2 23 471 493 470 493 0.94 9 13 8.8e-05 0.014 17.1 0.3 2 23 529 550 528 550 0.96 10 13 1.1e-06 0.00017 23.2 0.9 1 23 557 579 557 579 0.98 11 13 0.00079 0.12 14.1 0.2 3 23 587 607 586 607 0.97 12 13 0.65 1e+02 5.0 1.2 1 23 614 636 614 636 0.94 13 13 0.069 11 8.0 5.0 1 23 642 665 642 665 0.98
Sequence Information
- Coding Sequence
- atggaGACGTGCAGAACTTGTGCTAAATGTGATTTCGAAGATGATAAGAGTTGGTTCGATTTGTTCCATCCAACATGTTGGGAGGAGGAAATAGGAAATATACGTATGGAAATTAGTTACTGGAAATTAAAgatCTCACAAAATGATGGTCTGCCACAGAAAATTTGTGTGGATTGTTTCTCAAAATTCTGTACAGTTTACACATTTCATGCAGAATGTCAGGAagcacaattaaaattaaataatatcttcGATAAGATAGATGCACAAAGTTTGGAAGAGGATTCTATAGATAACTTgagtcacaataaatttatggaactaacaaatatatatgatgAGACTAGTGATATCATTGAAGAAGAACATTCTAATAGTGCATATAGTTTAAATACTGCAACTAATTTAGTGGATGAAATCGTAGAACAAGCAGAAAActcaaatatattacaaatggaGGTTTCAAATGTAGCTAAAGCGACAACTTCCGCTATAGTAACTTACACTGCCGTAAATAAGAACTCCAACGAAATTGTAGAAATACCACCAAAATcaccaccaccaacaacaacaacgacaacgaccGGTCCATTAGTTGAGCAACAATTAGCTGAAGTTGATATCTTAagttataatcaaataaatgaaGATAGCATAATTGATCAATTAGTTGAGGATATGATTGAGGAGATTGAGCCAGAAAGTGAAACACATATTACGAATACTGAACTAGAGACTGCAAATGGACCAGATAAAAATGAAATCGTATATACTTTTGAATGTAAATTCTGTTATAAATGTAGAGCTGAAAATAGTAGAAACTTCTCTACCCAACAGGAACTGTTAGCACACATCACAGCCATGCATAATACTGAATATCCATTTAACTGCCCGCACTGTGAACAAGGTTTTCAAGATGCTGCTTCACGTACAGTGCACATCAAGAATCaacatattgaaaaacattttaattgtgatgTTTGTGGTAAAAAGTATGCAGATCGTTTCAATTTACGTCATCACATTGAGAAATATCACAGTGACACTGATTTCGAGTGTCTGATATGTGAAAAACGTTTCTATTCACGTAAGAGTCTTAATTATCATATGAAATGGCATAATCCTGCTCGACAATTTAAATGTAGCCACTGTGATCGATTATTTATTAACCAGCGACATCTGAAGTGTCACGAAGAAACGCATACAGGAGTTAGAAACTCAGAGCATTGCACTTTTTGTGGAAAATctttCATACACTTAAAAACTTTACGCTGGCATATATATCGGAAGCATGGTGGCGACAAACCCTATAAGTGTGGCAACTGTACAGAAGCTTTCGATTCTTACATAGAGAAACGTTTACATATGCTAGATCTACACTTGGAGAATTTGACTTCTATTGAAAGAACCGAATGTATGCTCTGCCATATACGTTATGAAAACGAAATAGACTTAAAGGAACATATGTTGGAAGAGCATAAACAGGCCCGTAAGCtgaccaacaacaataacaacacactTATCATTGCCAATAATAAGcgtattttacaaaataagaaacagaaaaattataatggTCTACTGCAGTGCCAGGTTTGCTCACAGCGCTTTAATATGAAATCAGCACTGGAGCGTCATCTAGCCGTGCACTCTACAGAAGGACGTCCATATGCATGCCCACAGTGTTCAAAGCGTTTTAAACGCGCCCAAGACATGAATTGGCACATGAAAACTCATTCCAATGAAAAACCTAATATATGTGATGTATGCGGTAAGGGGTTTGCACTGAAATATGTGctaaatcaacataaaaaaagTCATGAAGttttagagaaaaattttacttgCATAACATGTGGACGTTCATATCTTTTTGAAAAATCATTGCGCCTACATGAGCGATCCCATTCGCAGCAGAACTATTACAAATGTGGACTTTGCAGTGAAAGTTTTGGAactcatattaaattaacttgccATATGCGTAAAACGCATGACACGATCAACAATAACCGGGAACTACCTTTGGATGAGTTGATAAATATTGtgatttcttaa
- Protein Sequence
- METCRTCAKCDFEDDKSWFDLFHPTCWEEEIGNIRMEISYWKLKISQNDGLPQKICVDCFSKFCTVYTFHAECQEAQLKLNNIFDKIDAQSLEEDSIDNLSHNKFMELTNIYDETSDIIEEEHSNSAYSLNTATNLVDEIVEQAENSNILQMEVSNVAKATTSAIVTYTAVNKNSNEIVEIPPKSPPPTTTTTTTGPLVEQQLAEVDILSYNQINEDSIIDQLVEDMIEEIEPESETHITNTELETANGPDKNEIVYTFECKFCYKCRAENSRNFSTQQELLAHITAMHNTEYPFNCPHCEQGFQDAASRTVHIKNQHIEKHFNCDVCGKKYADRFNLRHHIEKYHSDTDFECLICEKRFYSRKSLNYHMKWHNPARQFKCSHCDRLFINQRHLKCHEETHTGVRNSEHCTFCGKSFIHLKTLRWHIYRKHGGDKPYKCGNCTEAFDSYIEKRLHMLDLHLENLTSIERTECMLCHIRYENEIDLKEHMLEEHKQARKLTNNNNNTLIIANNKRILQNKKQKNYNGLLQCQVCSQRFNMKSALERHLAVHSTEGRPYACPQCSKRFKRAQDMNWHMKTHSNEKPNICDVCGKGFALKYVLNQHKKSHEVLEKNFTCITCGRSYLFEKSLRLHERSHSQQNYYKCGLCSESFGTHIKLTCHMRKTHDTINNNRELPLDELINIVIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -