Tdal031589.1
Basic Information
- Insect
- Teleopsis dalmanni
- Gene Symbol
- -
- Assembly
- GCA_002237135.5
- Location
- CM026971.3:162759755-162763339[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00095 0.15 13.9 0.0 1 23 135 158 135 158 0.95 2 13 0.0082 1.3 10.9 3.6 2 23 207 229 203 229 0.93 3 13 0.001 0.16 13.8 0.2 1 23 334 357 334 357 0.91 4 13 0.096 15 7.6 1.3 2 23 372 394 371 394 0.96 5 13 0.001 0.16 13.8 0.3 1 23 440 463 440 463 0.93 6 13 0.00072 0.11 14.3 0.8 2 23 514 536 513 536 0.96 7 13 4.2e-05 0.0064 18.2 0.1 2 23 627 649 626 649 0.95 8 13 0.015 2.3 10.2 0.1 1 23 729 752 729 752 0.94 9 13 0.00075 0.12 14.2 2.7 2 23 802 824 801 824 0.96 10 13 0.0075 1.2 11.1 1.1 1 23 891 914 891 914 0.92 11 13 0.057 8.8 8.3 1.5 1 21 966 986 966 987 0.95 12 13 0.0008 0.12 14.1 0.1 3 23 1041 1062 1040 1062 0.97 13 13 0.26 41 6.2 0.7 2 23 1112 1134 1111 1134 0.94
Sequence Information
- Coding Sequence
- atggAGGACTTAGAGCCATGGAATATGTTTACAAATGATATTGTAACAGATGCTACTGAAACAGGTAATGATAGTGTAAGCAATAAAACTATTGCCTCAAATGAAACAAAAGTAAAAGAAGAACCTGAAGATgtcgaagaagaagaagcagaagaagAAACAAATCCTGTGGAGAATTATACCGAACAGGTTGTAAAAGATGAGTTGAAAACTCCACCACGTTCGAATGAAAATGAATGTGATGATGAACCTGatgatacaatttttaattttggtttagaGCCACTAGTAAATATAGCAGAGTCATCTGAAAATGTGCCAATTACACCAATTGTTGAAATGAACGATAGTAGTTCCCAAAGTGAAAATGAAGTAccaataaattatgaaaatgccGTAGTATATATATGCCCTGCATGTGGATCAGAATTTGACACCCAAGACGCCTGGAAACGTCATATGAATGCAatgcataattttaatactcgtcgtggtttgaattttattcaaattgataaattatatcatcAATGCCTGGAGTGTCACAAACGCATAGCAATGCATGCtatggaaaatttattgaagCACAAATTTACACATCTCCCCTATCGTTGCACCAAATGTAAAATTTGCTTAAGACAGTATAAATATCGTCAGGATTTAATGGTTCATTTGCGAATGACTCATCGGGATGATTTGGTTGCTATGgctaaaactgaaaaaaatcaAACCCCACTGGTAAAGCAAAGTATGCCACGTACTATACATTTGGAAATTAAGGACATCAAAGAAAATGCAGTGGACATATATGATTGTGACAATATCaaagtaaaaaatgaattaattgaaCCGGATGATGATGACAGTAATAATATGGCAGACAAATCTAACTCAATTATGTTGCCATCCTTTTTGGAAGATGCTCTAAGTAGAAGTTCGTCGCATGCATCAGAACGTCAGTCGGTCGCAGATGAAGACTCAAAGGAAAccaatatacaatatgtatgttCAAAATGTGGTGTTGGATACAACACACAATCACAATGGCGGCAACATGTAGAATTTGTACATCAAGTACGAAGTTCTTCTCAACATGCATACAAACCTATGATTCGTTGTAAACTCTGTTTTCGTTCATTTATAGCTCACGAAGATGTGGTTAAGCACCTTATGAAACAACACCGTCTTAGCAGCGAGTTTGATGCAGATGAAAGTCAGACTAGAGATGGTTATGATGATACAAATACATCAGATAATATTCTTAGTGATCAATCGTCAAAAAATGATGAAAAGGATCCATTTGAACCGCACATTGATTATTTATGTCCACAATGTGGCCGAGAgttttttgacaaaaaacttTGGCGGGTGCATATTGTAAAATCACATCAACTAACTAATTTAGAAGTTCTCAATTTTAAAGTGATTAACGATAGACAGGTTATGTGCctagaatgtgagaaaattataacaaatgctTATGGTGTTCAGAACGCTCAACAACATCGTATTACTCATATGCCGTACAAGTCATTCATCCGTTGCAGACTTTGCGCAAAATCATACACTGATCGTAAAGGTTTGGTAAAACACTTACGGTCATCACATCGCATTGGTGCTATGCATGGCTTCGATGTTAATGCTGTAGAGCCCTCTCCATcaacattacaacaacaaaaacctcAGATTTCAGTTCGTGTATTGCCACAGAAAAACATTAAACCGCAAACTCCGAAAAAACCACAGAAGGAAATAGTGCGACATgcgaattatatatatgaaatacaatacCTAGATGAAGATGATGATTGTGTGATTGATGATGCTCCTGTACCAGAACTTTCATTTAGCAATAGCATTGATCAATTAACGCGTCTAAAATGTTCAGATTGTGGTTCAATATTTTCGACACAAGAAGCTTTGCAAACACATATTAATGAAGAGCATGAATTTCTTGATTTTAACAATCTTAAACCAATGCCTGATAATACCGCAAACAGCTCGCGATCCTACTCTCGTACTTCTATGGACACATCGAACTCTTCATTTACACGTGATTCGTCTACATACAATGCGCTACCGCAGGATGAACAATCAAATGATGCTGACGATTTACTCAAACCCACAGGAGAAGAGGAGAATAATTTATCGCAAGACAGTTGGAATATAGAACGCAATTTTTGTTACTTATGTCCAGCTTGTGGAGTATTGTTCAAAGCACAGTCTGATTGGCGTCgacatataaataattcacataattttgataaaagacattttttaagttttaagcaAATTGATAAATTTCGTTTTCAATGTACTATATGTAATGATATTGTATCAAGCCCAAAATTAAAAGGCTTCCAAGATCACAAATTCCGTCATTTGCCATATAAACTGTATATTAAATGTCTTATATGCGGGACTTGCTACAATCATAAACCAAATATGATCACTCATTTGAGAGTGCGTCATAATATTAACGATGGACGTTTATcgccaatacaaaatgaacGAGAATTTGACCTAAcatcacaaaataatttaaccaACAGATCATTAAATTTAGCACCTGCTTCGACATCCGCCGCAATTTATCCCAAACCACCAGGACTTAAAACAGTAGAAGATGCAATTTCTTATCATAATGCAGTTGATCTTGATTTCATAACATATTATTGTCCACAATGTAATGAAAATTTCAACTCGCATGTCTTCTGGCGTAAGCATATTGTTGAAGAACACGGATTCAATAGTCGTGCTGGTCTTAACTTTCGACAAATTGATCAACATCACTTTTTGTGTTTACAATGCTACAAGCGTGTAACTGTGACCCATACAAAGGGAGCTATCGGGCAACTCCAATCACATAAGTTCCGGCATTTGCCGTACAAATCTTTTAAATGTTTAACTTGCAACGGCGAGTTTGTTCGTAAACAAATGTTCTTTAAGCACCTCAATAGACAAACGAATCGATGTGATAATCAGCCAATACTGCATAATGATTTCGATGAATTCGAAAAAGCAAATACTACAGATACCGAAAATGAACAGGAACAAGTAAACGCTGATAATTTACCAAGATCCGAACACAGTGATTCTCAAAGTCCTTTCATTCTGCTCTGTCCACAGTGTGGTAAAGAGTTCGATACATGGAGGCCATGGCGCGAACACATTAATAGTGAACACAATCTAGGAAAACGAGAAGcactcaatataaaaaaaataagcccAATATTGCATGAGTGCCTTCAATGTAATGAGCAAATAAACGGCAATAAACTAAGAGATTTACAAGgacataaatttaaacatttgtcATATGGCGCTTATATACGTTGCAAATCCTGTGACGCTGCTTACTATCATTTGCGTGCAATGGAAAGACATGTCGAAAGTAAACATCCCCATATGATAGATAAGAATGATATGTATCAGAAAATGCTGGAATTGCAGCAGTATGATGATACAACCTTAAACGACACTAATGAAGCAAATGACTTTTCAGAAGTAGAAAATATACAGGATGAAACCGATAAAACAGATGATCAATTTCCTTTGGGTCAGTGTAATTTGATATCTGGATAa
- Protein Sequence
- MEDLEPWNMFTNDIVTDATETGNDSVSNKTIASNETKVKEEPEDVEEEEAEEETNPVENYTEQVVKDELKTPPRSNENECDDEPDDTIFNFGLEPLVNIAESSENVPITPIVEMNDSSSQSENEVPINYENAVVYICPACGSEFDTQDAWKRHMNAMHNFNTRRGLNFIQIDKLYHQCLECHKRIAMHAMENLLKHKFTHLPYRCTKCKICLRQYKYRQDLMVHLRMTHRDDLVAMAKTEKNQTPLVKQSMPRTIHLEIKDIKENAVDIYDCDNIKVKNELIEPDDDDSNNMADKSNSIMLPSFLEDALSRSSSHASERQSVADEDSKETNIQYVCSKCGVGYNTQSQWRQHVEFVHQVRSSSQHAYKPMIRCKLCFRSFIAHEDVVKHLMKQHRLSSEFDADESQTRDGYDDTNTSDNILSDQSSKNDEKDPFEPHIDYLCPQCGREFFDKKLWRVHIVKSHQLTNLEVLNFKVINDRQVMCLECEKIITNAYGVQNAQQHRITHMPYKSFIRCRLCAKSYTDRKGLVKHLRSSHRIGAMHGFDVNAVEPSPSTLQQQKPQISVRVLPQKNIKPQTPKKPQKEIVRHANYIYEIQYLDEDDDCVIDDAPVPELSFSNSIDQLTRLKCSDCGSIFSTQEALQTHINEEHEFLDFNNLKPMPDNTANSSRSYSRTSMDTSNSSFTRDSSTYNALPQDEQSNDADDLLKPTGEEENNLSQDSWNIERNFCYLCPACGVLFKAQSDWRRHINNSHNFDKRHFLSFKQIDKFRFQCTICNDIVSSPKLKGFQDHKFRHLPYKLYIKCLICGTCYNHKPNMITHLRVRHNINDGRLSPIQNEREFDLTSQNNLTNRSLNLAPASTSAAIYPKPPGLKTVEDAISYHNAVDLDFITYYCPQCNENFNSHVFWRKHIVEEHGFNSRAGLNFRQIDQHHFLCLQCYKRVTVTHTKGAIGQLQSHKFRHLPYKSFKCLTCNGEFVRKQMFFKHLNRQTNRCDNQPILHNDFDEFEKANTTDTENEQEQVNADNLPRSEHSDSQSPFILLCPQCGKEFDTWRPWREHINSEHNLGKREALNIKKISPILHECLQCNEQINGNKLRDLQGHKFKHLSYGAYIRCKSCDAAYYHLRAMERHVESKHPHMIDKNDMYQKMLELQQYDDTTLNDTNEANDFSEVENIQDETDKTDDQFPLGQCNLISG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -