Tdal019336.1
Basic Information
- Insect
- Teleopsis dalmanni
- Gene Symbol
- L
- Assembly
- GCA_002237135.5
- Location
- CM026971.3:479459-488312[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 6.2e-06 0.00096 20.8 1.7 1 23 181 203 181 203 0.98 2 18 0.49 76 5.3 5.7 1 23 209 231 209 231 0.98 3 18 2.7e-07 4.1e-05 25.1 3.1 1 23 237 259 237 259 0.99 4 18 1.2e-05 0.0019 19.8 0.3 1 23 265 287 265 287 0.98 5 18 0.1 15 7.5 0.3 2 23 350 373 349 373 0.91 6 18 0.0024 0.38 12.6 0.4 2 23 397 419 396 419 0.96 7 18 0.047 7.3 8.6 0.7 1 23 511 533 511 533 0.97 8 18 0.0046 0.71 11.7 1.6 2 23 541 562 540 562 0.96 9 18 0.0013 0.2 13.5 0.2 1 23 570 594 570 594 0.92 10 18 3.3 5.1e+02 2.8 0.0 1 19 599 617 599 619 0.92 11 18 5.5 8.6e+02 2.0 0.2 2 23 630 652 629 652 0.94 12 18 0.0034 0.53 12.1 2.7 1 23 691 713 691 714 0.96 13 18 0.0012 0.18 13.6 4.6 2 23 913 935 912 935 0.96 14 18 0.14 21 7.1 0.1 1 23 941 963 941 963 0.92 15 18 0.3 47 6.0 1.6 2 23 971 992 970 992 0.96 16 18 0.25 38 6.3 0.5 2 23 1083 1104 1083 1104 0.96 17 18 0.0031 0.49 12.3 0.0 1 23 1114 1136 1114 1136 0.96 18 18 0.052 8.1 8.4 1.2 1 23 1143 1165 1143 1165 0.94
Sequence Information
- Coding Sequence
- ATGATGGCATTGAAAATGTTATATCGTGGACCCAGTTCGAGacttgaaaatttaattgaaaaaatacaaGCTACAAAGGAAATTGTAAATACTgATATGTATTCCACACACACTTCATCTAGTTATTCACCATCGATTTCGGATGGTACATTAACACCCAACTCATTACATCATCTGCCCGTACAACATTTGTCCCACTTGGCGCACACCAACGAAGAAGACATTGCGCAGCCACAGCGTCTGCGGAAGCACGTCAGCAAAGTCAATGGTGACTTGGTGCCTAGCAATAGACACAATGAAGCAGACGAAAATGAGGTAGCGTACGATAAAAGCAGCGTTGAGGTAGAAGGTAAAAACCGCAGTAATGGAGACTGCAGTGGCATTGAAGGTGGAGTAAACTTTGAGCAATTAAAACGACGACATCATCGTCACGCAGAGCATGCACTGAAAATTCCAACTAAACTGCGGAAACTTGAACGGGATGCAGCCAAGTTAGATAAGTTGACAGGCGAAGGTATTAAAAATAGCGCCGACGGATCCTATCAGTGTCAGTTCTGTGATAAATCATTTCCACGTCTTGGCTACTTAAAAAAGCATGAACAGaGTCACGCAGAACATTTACCTTTCAAATGTGAATATTGCGCACGCCTTTTCAAACATAAACGTTCCAGAGATCGTCACACTAAGTTACACACTGGAGATCGTCGCTACAGATGTCCCCATTGCGAAGCTGCTTTTTCTAGAAgtGATCATTTGAAGATTCATATGAAAACTCATGACAATCAGAAGCCATTTCAATGCACTATTTGCAACAGGGGCTATAACACTGCTGCTGCGTTAACTTCTCACATGCAGAACCATAAAAAGCAAGCTGCCTTATTGGCTGCAGGCGGCAATCCTCAAGCATTAAACTATAGTCCTCGTTCAACAGGATCTGCTTCTAGTAACAATAGCCTTCATAAACGACGATATGGCTTAACTCAAGCTTCTGATAGTAGTCCTAGCCATTTGGATTATCCAAAATGTTTACGTCCTGCCACATTCCTAAACTGCAACTACTGCACTAAATCAGACTTCAGTTCCCTAGAATTATTAAACGCACACATACAGAGTATGCATGATAAGGAATTAACGCCCACACAAGCGCAAGCTCCTCCACTAGGTAGCGATTCCAACAGCTTTCAGTTGTCCTGCGAATATTGTACCATGAAATTTCCTAATATTCCAACGATGTTCCAGCATATGCGTACTATACACATCGATCGCCTCACTAGCCCTAATTCATACTTTGAACACTTTAATCGCTTAGCAGCCACCGGCACGTTTAGTCCACGTTTACCCATAACAACATCGCTGCAACGTTCGACTAAAGATGAACATCAAATTAAAGTAGAGCAATCATTGCCAAGTCCAAAATGCAATGATTTAAAACAAGAGGATCAACCTACTGATCTAAGTCAAAATAAACGGAGATCAGCTACTCCCACAACCCCACGCACCTCACCACAAGTCCTTGATAAGCCCggtattttcttttgtaatcAGTGTAATGCAGGTTTACCTGATTTCGACAGTTTTCGCAATCACCTCAAGTCGCACATTGCACAGAACTTAAACCTCGTTTGCCACCATTGCGGATTAACGCTGCGCGAACAAACTGAATACGAACGACATGTCATATCTCATTTTCTAATTACGAATTCCGAGTACAATTGTGCCGGCAATTGCAATAAAACCTACGTAAAGCCGGAGGAGTTGCAAAAACATTTGCTGGATCAGCACGTCGTTCCTATGTACAAATGTGCGATTTGCGCAGAGCTTTTTGAAACTAAAGTAGCAATTCAAGTGCACTTTGCTTGTACACACTCAACTGAAACTAAATTATTGAGATGTACCGCCTGCATGGAGGTATTTCGCGCTGAACCAGATTTCAATATGCATGTGAAAACTCGACATCAAACTGCTAATGGCACCACAATGACTAACAACTCATTACAGTGCATGTTCTGCCGCACAGTTTGTACTTCAGACCTAGAGATGCATTTTCATTTAGCAGCACACGCAAGACAATTTCGTTGCCCTTCTTGCCCGGAAACATTCCATGTTGAATTTTTGCTTGATCGCCATATGCAAAGTCATCATGGTGGAAATGAGACAGTAGCTGACACGACCAAAGAGTCATTTGAAGATAACTCACCAACAGCCGTGCCAAACAATAACACAATAGGTTCCATGAATCCTTTATACGTTAATGCACTTTTTGGAAAGACTCCATTAATACCATTAGTTgcgcaaaataataataacagcatCTTAGATTACAATGCTGCGTTCGCTGCACATCTTAACAAGGGACTTTTTCCGACCACCAACACAACTGCAGTTGGTGGAAAATTCTACAGTCCATTACAAGTAGACACTAATAGCATGAAGCATCCTGCCCTCATGTACGGACTAAGCCAGCGCTATTTTGATACTAATCGTACCTTGATGGATATATACGCACAGCACCATCAAGATAAGAATAACGGAGGAAATTATTTCATTAGTCCAAAACACGCAAGTAACGTGCAATCCCAACAGGACTCACAGCACAACCGTAATTCTAATGAACCTACAACATCTCCAGTTGCTGGCTTCAGTTGCGGGATGTGTGAGCGTAACGATTTTCGTACAGAGGCAGAAGTTCATTCGCATCGTAAAATAGTGCACAACATGAAAACTGGAGTAAGCTTGCGATGTGCCTACTGTTCGGGAAATTTCAAATCACGTAGCGAGTTGGAACATCACATGAAAACATGTCACAACTCAACCGGGAAACACAAGTGTTTAATCTGCGACGAGATATTTCCATCTCCCGCCATTTTAGCTGAACACAAATTGCAACACTCCAAAGTAGGTCAGTCAGGCAAGTGTTCACACTGCGCCAAGCCGTTGTGTGATGTAGCATCGTTCAAAGCCCACCTTACTGAGCATAATAATGAGGCACAAATGCCAGTACAATGTATTTGCTGTCGACAGTCTTTACATTCAGAATTTGAGATTGGACTACATgcaaaATTCCATACTAAATCAAGTAACGTACCAGAAGCTGCGTGCGCTCTTTGTCTAGAGCCCATACCAAATACAACTGCAGATGCCAAAGTATGTGAGAAATGTTGTCGTAAACACAATCTTAATTCGAAATACAAACCTCGTGAAAGCTTCGAACGCACATCTGAAATGCGTCCACATTACATAGATAACCGCTGCAATCTCTGTAAAATGATATTACCACATCCGCAAAAACTGCAGGAACACTTAATTGAGCACACGTTTGCGGGCTGCGAAGATCGTGGATTTATTTGCTACATATGTTCTGCAGTCTTTACTGCGCCTAGTGGTCTACTGAACCATATGACGGAGCATGGGCTTAATGCAAGACCCTACGATTGCAATTTATGCACAGAGAAGTTTTATTTCCGCGCCGAGTTGGACCATCATCTTGTTGAACATGAGCTACGTATCATACCTAATCTAAGAGTTAACACTGAAAGAGTTACAAAAGAAGATAGCACACCACCAGAACTAAAACCGAAAAATTCGGTGCATGCAATTTTGCCTGAagtaaaacaagaaatatttgaaGCGGAGAACAAATCTACCGCCGGCGACGATGATGAATATATTGAAGTTGAAAAAGTCTCTGATATGAACAACACTCACGGAGGAGAGCACAAAGTGAAAGAAATGAGTGAAATTAAAGTCGATCCAGTGAAGGAACAAGGGGAAAGTGTTGCAAcctaa
- Protein Sequence
- MMALKMLYRGPSSRLENLIEKIQATKEIVNTDMYSTHTSSSYSPSISDGTLTPNSLHHLPVQHLSHLAHTNEEDIAQPQRLRKHVSKVNGDLVPSNRHNEADENEVAYDKSSVEVEGKNRSNGDCSGIEGGVNFEQLKRRHHRHAEHALKIPTKLRKLERDAAKLDKLTGEGIKNSADGSYQCQFCDKSFPRLGYLKKHEQSHAEHLPFKCEYCARLFKHKRSRDRHTKLHTGDRRYRCPHCEAAFSRSDHLKIHMKTHDNQKPFQCTICNRGYNTAAALTSHMQNHKKQAALLAAGGNPQALNYSPRSTGSASSNNSLHKRRYGLTQASDSSPSHLDYPKCLRPATFLNCNYCTKSDFSSLELLNAHIQSMHDKELTPTQAQAPPLGSDSNSFQLSCEYCTMKFPNIPTMFQHMRTIHIDRLTSPNSYFEHFNRLAATGTFSPRLPITTSLQRSTKDEHQIKVEQSLPSPKCNDLKQEDQPTDLSQNKRRSATPTTPRTSPQVLDKPGIFFCNQCNAGLPDFDSFRNHLKSHIAQNLNLVCHHCGLTLREQTEYERHVISHFLITNSEYNCAGNCNKTYVKPEELQKHLLDQHVVPMYKCAICAELFETKVAIQVHFACTHSTETKLLRCTACMEVFRAEPDFNMHVKTRHQTANGTTMTNNSLQCMFCRTVCTSDLEMHFHLAAHARQFRCPSCPETFHVEFLLDRHMQSHHGGNETVADTTKESFEDNSPTAVPNNNTIGSMNPLYVNALFGKTPLIPLVAQNNNNSILDYNAAFAAHLNKGLFPTTNTTAVGGKFYSPLQVDTNSMKHPALMYGLSQRYFDTNRTLMDIYAQHHQDKNNGGNYFISPKHASNVQSQQDSQHNRNSNEPTTSPVAGFSCGMCERNDFRTEAEVHSHRKIVHNMKTGVSLRCAYCSGNFKSRSELEHHMKTCHNSTGKHKCLICDEIFPSPAILAEHKLQHSKVGQSGKCSHCAKPLCDVASFKAHLTEHNNEAQMPVQCICCRQSLHSEFEIGLHAKFHTKSSNVPEAACALCLEPIPNTTADAKVCEKCCRKHNLNSKYKPRESFERTSEMRPHYIDNRCNLCKMILPHPQKLQEHLIEHTFAGCEDRGFICYICSAVFTAPSGLLNHMTEHGLNARPYDCNLCTEKFYFRAELDHHLVEHELRIIPNLRVNTERVTKEDSTPPELKPKNSVHAILPEVKQEIFEAENKSTAGDDDEYIEVEKVSDMNNTHGGEHKVKEMSEIKVDPVKEQGESVAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -