Tdal022322.1
Basic Information
- Insect
- Teleopsis dalmanni
- Gene Symbol
- -
- Assembly
- GCA_002237135.5
- Location
- CM026971.3:43017260-43023499[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00036 0.056 15.2 3.6 1 23 251 273 251 273 0.97 2 11 0.00013 0.021 16.6 9.2 1 23 279 301 279 301 0.96 3 11 0.00014 0.021 16.5 5.4 1 23 307 329 307 329 0.98 4 11 0.00036 0.057 15.2 2.3 1 23 335 357 335 357 0.95 5 11 3.6e-05 0.0055 18.4 0.6 1 23 363 385 363 385 0.97 6 11 2.2e-06 0.00034 22.2 0.1 1 23 391 413 391 413 0.98 7 11 9.6e-05 0.015 17.0 1.8 1 23 418 440 418 440 0.97 8 11 0.31 48 6.0 0.2 1 23 446 469 446 469 0.89 9 11 0.0002 0.031 16.0 0.1 1 23 555 577 555 577 0.98 10 11 0.0034 0.53 12.1 3.7 1 23 685 707 685 707 0.96 11 11 0.0052 0.81 11.6 4.9 5 23 720 738 712 738 0.92
Sequence Information
- Coding Sequence
- atgtgTGCTGCACAAAGCAACCCGCAGCAGAGCTTCGGCTATACATGGGGCTTCGCTGACAACAGTCGCGCGGATTCCGTATTAGAAATGTCGCCTAATATTAGTTATACCGTCAGCAGTGAATCcATGCCATATTTGTTAACGGATGGTTCAATCACTATGCAAAAGGATGTCAAAAATGCTTTAGCTGCAAATAAAGGAAGTGTTGTACGTCGCATGTTTGTTGTTAACGAACCATTTCCATCAGGTCAACGTGTTATCACCACAAGCGCAGCCCCAACAGTTGTTAAGAAACAAGAGCAACAAGTTTTAAGTTTGAATTGcgataaaaattATCTTTTAGTTGATCACACAGATCAAACGCATGCACTAACAAATGGTATTGTCGAACAAAAAGCTATACTTACCGCAGCACCTCCTGGAAGTAAAACACATTACAGTCCAATTGGTCCCATACAGTTAACAGCTGAGGAATGTAATGAAATTCTAATGAAACGTGCACTTGCAGCTTCTCAACAAACTCAAACAATAACCACCACAGATGCCCACACAGGAACAAATGATATTATACCTGGAATATCGGTGCAGGTACAGAAAGTAATACAAGGACTTGAAGATCAAGATGATTCACAAGGAGATACGCCAAACTTAAAACTAGAACCAGGAACATTGGAATTATCTCCCAAAACAGAATTACAGGAATCTATTAATTTTAGTGAcaACGATACCACTATAAAGAAAGAACGTCCTTTTAGTTGTGATGAATGTGGCAAATCATTTTTACTTAAACATCATTTAACGACACATGCACGTGTTCACACAgGTGAAAGACCACATGTTTGTCCTCATTGTGGTAAAAGTTTTGCCCATAAGCATTGCCTCAATACACATCTCCTGTTACACTCCACTGAGCGTCCATACCAATGTGCGGAGTGTAAGAAAAGTTTTACATTAAAACACCATCTCTTAACACATTCACGTGTACATAGTCGCGATCGTCCATTTGTGTGCCAAGAATGTGGTAGATCGTTTCCTTTAAAACGACATTTGGTAACACATAGTAAATTTCATGCAGGAGAAAGACCTTTTGTATGCGAAGAATGTGGAGAAAGTTTTGCTCAAGAAAATCACTTAATTATGCACTCACgATTTCATGGTTCAATTAATCCATTCGTTTGTCCTGATTGCGGTGTAACATTTCCGCGTAAATTTCAACTTGTAAATCATGGGCGAGTGCATGGTAAGGTGCCACATTCATGTACCGTTTGCGGCaaagaatttttacaaaaacgtacACTCGTATCACATATGCGTATACATACCGGAGATCATCCATATCCTTGTATAAGTTGTGGAGAAGGATTTTTAACAAAAGCTGAGCTCAATCAACATTTTCGAAATAGTCATGGTGGCGTTAATCCTAATTCTTCGTCTAGCAATGTCGTGCCTACTAATACAATAATAACGACCCAACAACCTGCACAAAACATTCAGttACATCAAACTCAGCAACAGCACCATCAACAAcagcatcagcaacaacaacagcagcaacaacaaacacagGCTCACCCACAAACAATTACTGTTATTAGCAATTCAGCAAATGCACAAATGCTGACTGTAACAGCCAATGATGGTAGCGGCATAACACGACCACAATTCGTTTGTCgAGAATGCGGAAGTGCCTTCAATAGTCGTGAAGCCTTAGCGCTTCACTTGAGACTTCATACTGGTGATAAAACCCTTATGACTGATCTTTGTGCACTAACGGCAGCTTTACCACCAAATTTCTTAAATGGTGGTTTAAATCCGAACACAACTGTTGTAGCAACAAATCCAAATATAGTTGCACAAAATTCAGTGCCAGTACAAATAATCTCATCTACGGGTCAAGTGGTAACACAAACCACATTGGTGCAGGCCGCCGCATCCACACATCCTCAAACAGTAGTGACGACAGTGCCAACAGTTGCagtacaacaacagcaacatacGCAAATGCAACCGGCTGTTGTAGCACAGCAACAAACGCCACCAAAACCAAAATCTCATTTCTGTCAAAGCTGTGGCAAAGGATTTGCTGCTAAGCATGGCTTAATGCAACATACACGTAGACATCCCAATGGTGGTTGCACAGTACGAACACATGTATGTGAATGTGGTAAAGCCTTCTTCCAGAAGAATCATCTTATGTTGCATCAACGGCAACACTTGGAAACAAAGCCAGTTATTGCACAACAACAGGTATGTCACGTATAA
- Protein Sequence
- MCAAQSNPQQSFGYTWGFADNSRADSVLEMSPNISYTVSSESMPYLLTDGSITMQKDVKNALAANKGSVVRRMFVVNEPFPSGQRVITTSAAPTVVKKQEQQVLSLNCDKNYLLVDHTDQTHALTNGIVEQKAILTAAPPGSKTHYSPIGPIQLTAEECNEILMKRALAASQQTQTITTTDAHTGTNDIIPGISVQVQKVIQGLEDQDDSQGDTPNLKLEPGTLELSPKTELQESINFSDNDTTIKKERPFSCDECGKSFLLKHHLTTHARVHTGERPHVCPHCGKSFAHKHCLNTHLLLHSTERPYQCAECKKSFTLKHHLLTHSRVHSRDRPFVCQECGRSFPLKRHLVTHSKFHAGERPFVCEECGESFAQENHLIMHSRFHGSINPFVCPDCGVTFPRKFQLVNHGRVHGKVPHSCTVCGKEFLQKRTLVSHMRIHTGDHPYPCISCGEGFLTKAELNQHFRNSHGGVNPNSSSSNVVPTNTIITTQQPAQNIQLHQTQQQHHQQQHQQQQQQQQQTQAHPQTITVISNSANAQMLTVTANDGSGITRPQFVCRECGSAFNSREALALHLRLHTGDKTLMTDLCALTAALPPNFLNGGLNPNTTVVATNPNIVAQNSVPVQIISSTGQVVTQTTLVQAAASTHPQTVVTTVPTVAVQQQQHTQMQPAVVAQQQTPPKPKSHFCQSCGKGFAAKHGLMQHTRRHPNGGCTVRTHVCECGKAFFQKNHLMLHQRQHLETKPVIAQQQVCHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -