Tdal027960.1
Basic Information
- Insect
- Teleopsis dalmanni
- Gene Symbol
- -
- Assembly
- GCA_002237135.5
- Location
- CM026971.3:108956638-108965929[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.5 77 5.3 1.2 1 23 224 247 224 247 0.90 2 20 1.6 2.5e+02 3.7 3.1 2 15 252 265 252 274 0.72 3 20 5.4 8.3e+02 2.1 0.6 1 9 276 284 276 300 0.80 4 20 0.0008 0.12 14.1 6.3 1 23 306 330 306 330 0.98 5 20 0.00015 0.023 16.4 1.1 1 23 336 359 336 359 0.93 6 20 0.00067 0.1 14.4 0.6 3 23 367 388 365 388 0.93 7 20 1.6 2.4e+02 3.8 0.3 2 22 395 415 394 415 0.94 8 20 0.0029 0.45 12.4 1.7 3 23 442 462 440 462 0.97 9 20 1.2e-05 0.0018 19.9 2.1 1 23 469 492 469 492 0.94 10 20 1.1e-05 0.0018 19.9 0.4 2 23 498 519 497 519 0.97 11 20 0.23 36 6.4 1.1 1 23 825 848 825 848 0.95 12 20 2.8 4.4e+02 3.0 0.9 1 9 877 885 877 901 0.62 13 20 0.0019 0.3 12.9 1.2 1 23 907 931 907 931 0.98 14 20 0.14 22 7.1 0.4 1 19 937 955 937 955 0.92 15 20 0.039 6.1 8.8 4.5 2 23 967 989 966 989 0.96 16 20 0.00096 0.15 13.9 0.4 2 23 996 1018 995 1018 0.96 17 20 1e-05 0.0015 20.1 0.6 1 23 1039 1062 1039 1062 0.96 18 20 0.0037 0.58 12.0 3.7 1 20 1066 1085 1066 1088 0.95 19 20 0.0015 0.24 13.2 5.0 1 23 1093 1116 1093 1116 0.96 20 20 3.9e-05 0.0061 18.2 1.6 2 23 1123 1145 1122 1145 0.97
Sequence Information
- Coding Sequence
- ATGACACAGTGTAGAAGTTGTACTGAAACAATAAGTTTAGATAGTATCggttataatttatttccagAAAAAGAAAATGATCCGGATTACACGCATTGGACCGAAGACTTTTTGGAACACATGAATTTCTGGCAAATTGGGattCGTTTGGATGATGATTTACCAAAACAGATTTGTGAAACCTGCTTCCAAACGTTTTcaataatactaaattttagAGAACAATGTTCGAGTGCTGATGTAACTCTTCAAGAAATAAAACACGAATTAGAAAAGGAAGACATAAGATATGATGATGTACTTGTTGAAGAAGTATATGTTGAAGAATACGAAAATGATTCACTTGTAAATAATGAACTTGAATATACATCCGCTGATATAGACGTAATAAGCGTCGAAAGCGTCGAAAGCGTCGAAAGCGACTATGAAGATAGTGCAAGTGAACATGAAGTAAAAATTGAGATAGACACCGTTTTCGAGGAAAAGGAGGAGGACGTCAAAAAAGTTAGAAATAGTACGAGATTTGATATGAAAAGCATCTCTAATTTAAAACCGAATCCGCTTCTATGTACTTTCTGTTTCTCTGACAAATCTAAGGACGTACTATATCCATCAGAGGAAGAATTGAAAGTGCATCAGCAAGAAGAACACCTTGATCATATAGAAGCGTATAAATGTTTGATATGCCTTGAAAGATTTGATACAAGTGATGAGGCGAAAGGACATTTTAATGCCTGCCATAGAATAGGCGAAACTTGTCATATATGTGGCAAATTTGTGAAACATTTATCTACCAATCATCTGCAACGTCATGTGAAATCTACATTTACTTGTGAAATTTGCGGAATTGTTATGCGCAACTGTTCAGTAATACAATTTGAATATCACAAAAGGTGGCACGACCccaaaaagcaatttaaatgttCCCATCAGggttgtgaaaaaaaatttgttactcATAACCACTTAAAAGCTCATATGTCCGTACATAAAGAGTTTGGCGCTTTCCTATGCACTGTGTGCGGAAAAGACTTCGCTACCAAATTTATGCTTAAAACCcatacaattaaaaatcatgGAGCTAACCCTGAGATAGCATGCAACATATGTGATAAAGTATTTGAGACTTACAAACAAAAGCGAAAACATCAAAGCGAGGAACATCCTGAAAAGATAACTATAAGTTGTGAAAATTGTCACAATTTGTTTCCAACTGAAACTGGTATGCGCCTACATTTAAGGAGATGTCAAATAATGCGGAATAGAAAGCCAACTGCTTATACAAGACATCCTCCAGCAAGATCAAGCGGTGGCAGTATTGCCTGTAGTAATTGCACCCAAACATTTCACACAGAGTCCACGTTTTTAGCCCATCAAAAAGTACATTCATCTGATGGACGTCCATTCCCGTGCAagcaatgtaaaaaattttttaaaactgcaagtaATCTACGTACGCATGAACAATTAATGCACGGAGAGAAGCAGTTGGAGTGTGAAGTTTGCGGCAAGCGCTTTGCACATGGTTACACACTCACCGTGCACATGGAAACACACAATgAAGACAGAGAAAAAATGCGTTGCAGAACttgtgcaataaaattaaatgttggtGATTATTGCTATGAACTGTTCCCAAAGGCGAACACAGATGGCTACAACAGCTGGGCCGTTTCTTTTATCGCTCAAATGGAGATGTGGAACATAAAAGTTTCGCTTACCGATCACTTCCCAAAACAAGTGTGCGCTGAATGTTATAATTCTTTTGATTTACTACAAAAATTTCGTAGCTTATGTGAAGAGTCAAATGATCACTTCAAAGATTTGGAAAAAGCTTTGTTTGATAACATTGAGGATTACTGTGTAGAGGCTGTGGAAGAAGAATATATAAGTGAGCTGGATATAGAACCAGTTAACGAGGATAACGAAATAGAGAAGCTTGAAGACTTCAGTGTTTCTGATTGCGAAGTAGAAACAGaaatagtaaaagaaataaacaatgaTTTAGCAAATATTTCCGACGAACTTAAATctaatgaattaaatgaaacaGTTGATGTGTACATGGCTACCGAcacatatgaaaatgaaatcacTTTCCTTGATTATGatgatataaatgataaaactaTAGAACTCAAGGACGGAGATCTGAATACTAATCAAGATACTAGCATTCAAGTTTCGCCGATTGAAGATGTTGGAATTGAGTCCATACTAGAGGAAAGCAACTCCAATGAAATCAGTGAAACTAATGATGAGGCTAATTCAGAAGAAAACATTACTGGTTTTGATGAAAAAACAAATTGGGAAGACCACATTGAAATACTTCCCAATAAACGCACCAGGGTGAAGCCAAATCCTTTAATATGCCTCATGTGCCTTTCCGATAAATCTGAAGACTTATTGTACAACAcgattgaagaaaaaaataaacatcatACGTTAATgcacgaaaataaaaaaaatccttatAAATGCTTGTTATGCGATAGCAGTTTCTATAGCCTTGCTGAAGCACAGtcgcattttaaaaataagcatAGACGTGGAAAAATATGCCCCATTTGTGCGAAGTTCATAAAAAGAGTTTCTTTGACACATTTGCAAAGGCATTTTAAGTCAAGTTATACATGCAATATTTGTGGCCTTGTCATGCAAAACAGTTCCAAAGCACAATTTGATTACCACATGAAATGGCACGATCCAGACAAACAATACAAGTGTTCTTATGAAGGTTGCGAAAAATCGTTTGTAGCCATAAACCACTTAAAAACTCACATATCATCACACAAAGGTGTGGGCGATTTTTTGTGCAGTGAATGTGGAAAAGaTTTTCTTACAAAAGCATTCCTAAAGGCACACGATGCGGAAGTGCACGGCGCAGAAACGCATATTAAATGCAACTACTGTAACCAGACTTTCCAAAATTACATTCAAAAGAAACATCATCTAAGGCTCAAACACTCTAATGAGCTGAAATCAACATGTGAAATATGTAATAGCACGTTTCCAACGGAGGCTGGACTACACATTCACATGCGGCTCTCGCATAATAAAACAGATAGTAGAGTATCTAAACCACCAAAGGAAGTAAACTGCTCAAATCGACCATATGCATGTGCAGAATGTGATAAGAATTTTAAGAGTATTAGTAACTTACGAACCCATCAAACGATGATGCATGCCTTGAGACATAAATGTGATGTATGCAGCAAGAAATTCACACTGAAAACAAGTTTAGTGGCTCATATGGAGTGCCACAAAAttgTTGAATTTCCATGCGATAAATGTGATTGCACTTATACAACCCGGAAGTCGCTTAAATTACATAAGCGATTAAAGCACAAAGAAGTGATGACTTTGAAATGTGATTTTTGTGGTCTGAAATTTGAAGAAAGGTCTCACCTTTatgCTCATATGCGAAAAGTACATATTAACGAATACTGA
- Protein Sequence
- MTQCRSCTETISLDSIGYNLFPEKENDPDYTHWTEDFLEHMNFWQIGIRLDDDLPKQICETCFQTFSIILNFREQCSSADVTLQEIKHELEKEDIRYDDVLVEEVYVEEYENDSLVNNELEYTSADIDVISVESVESVESDYEDSASEHEVKIEIDTVFEEKEEDVKKVRNSTRFDMKSISNLKPNPLLCTFCFSDKSKDVLYPSEEELKVHQQEEHLDHIEAYKCLICLERFDTSDEAKGHFNACHRIGETCHICGKFVKHLSTNHLQRHVKSTFTCEICGIVMRNCSVIQFEYHKRWHDPKKQFKCSHQGCEKKFVTHNHLKAHMSVHKEFGAFLCTVCGKDFATKFMLKTHTIKNHGANPEIACNICDKVFETYKQKRKHQSEEHPEKITISCENCHNLFPTETGMRLHLRRCQIMRNRKPTAYTRHPPARSSGGSIACSNCTQTFHTESTFLAHQKVHSSDGRPFPCKQCKKFFKTASNLRTHEQLMHGEKQLECEVCGKRFAHGYTLTVHMETHNEDREKMRCRTCAIKLNVGDYCYELFPKANTDGYNSWAVSFIAQMEMWNIKVSLTDHFPKQVCAECYNSFDLLQKFRSLCEESNDHFKDLEKALFDNIEDYCVEAVEEEYISELDIEPVNEDNEIEKLEDFSVSDCEVETEIVKEINNDLANISDELKSNELNETVDVYMATDTYENEITFLDYDDINDKTIELKDGDLNTNQDTSIQVSPIEDVGIESILEESNSNEISETNDEANSEENITGFDEKTNWEDHIEILPNKRTRVKPNPLICLMCLSDKSEDLLYNTIEEKNKHHTLMHENKKNPYKCLLCDSSFYSLAEAQSHFKNKHRRGKICPICAKFIKRVSLTHLQRHFKSSYTCNICGLVMQNSSKAQFDYHMKWHDPDKQYKCSYEGCEKSFVAINHLKTHISSHKGVGDFLCSECGKDFLTKAFLKAHDAEVHGAETHIKCNYCNQTFQNYIQKKHHLRLKHSNELKSTCEICNSTFPTEAGLHIHMRLSHNKTDSRVSKPPKEVNCSNRPYACAECDKNFKSISNLRTHQTMMHALRHKCDVCSKKFTLKTSLVAHMECHKIVEFPCDKCDCTYTTRKSLKLHKRLKHKEVMTLKCDFCGLKFEERSHLYAHMRKVHINEY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -