Tdal029183.1
Basic Information
- Insect
- Teleopsis dalmanni
- Gene Symbol
- -
- Assembly
- GCA_002237135.5
- Location
- CM026971.3:125453569-125458540[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00014 0.022 16.5 1.6 1 23 179 201 179 201 0.98 2 15 0.084 13 7.8 1.9 3 23 209 229 208 229 0.98 3 15 0.0003 0.046 15.5 0.2 1 23 359 381 359 381 0.98 4 15 0.0018 0.28 13.0 0.2 2 23 388 409 388 409 0.98 5 15 0.00016 0.025 16.3 3.3 1 23 439 461 439 461 0.97 6 15 0.023 3.5 9.5 0.5 2 23 482 503 481 503 0.93 7 15 0.0034 0.53 12.2 0.2 1 23 509 532 509 532 0.97 8 15 0.41 63 5.6 0.6 5 19 543 557 540 558 0.91 9 15 7.5e-06 0.0012 20.5 3.5 1 23 567 589 567 589 0.97 10 15 0.074 12 7.9 1.7 2 23 595 616 594 616 0.96 11 15 1.1e-05 0.0016 20.0 0.3 1 23 625 647 625 647 0.98 12 15 0.0054 0.83 11.5 0.2 3 23 655 675 653 675 0.97 13 15 6.4e-05 0.0099 17.6 0.5 1 23 681 703 681 704 0.95 14 15 0.039 6 8.8 0.1 1 23 714 736 714 736 0.96 15 15 0.011 1.6 10.6 0.0 1 20 1257 1276 1257 1279 0.92
Sequence Information
- Coding Sequence
- ATGGAAGGGCGAGCATATGGCATTAATTGGTTGACAGCAGCGGTAAATGATATAAAAGGTTCCCAACTAATTGCTATGCAACCAGAGGATGCACATTTAATATCAAATGGTGttgatgaatatataataaaagctgACGAGCAAGATGAGGCCAATATACAACAAATTGCTGCTGAAAACCTAATTTTCATGGCAAGCGATGGGCAAATGTTAGCAGAATATATAACAGCTAAAGATGAGCAATGCTCGGTTGTTATCAGTCCCGATGATAATAGTGCTTTTGGAGTTGGTACTATAACAGCAGAAGATGGCATAGAAAATCATAGTGATTCTGAAAGTCGTTTTATTGACTTTGGCGATACATCACCACAAATAGTAACCGAAGAAGTAATAACAGATGATTGGGTACAACGTCAAGGAGAAGAATTtGTGGAAATACCTGCTGAACAACTTATTGGCTCTGCTTCACAAGTACTTTTAGATATAGAAGTACCTTTACCTACAGCGCAAGATGAATATACAACAATGCGTCCATATCCTTGTGATTTTTGTTCTAGACGTTTtcgtaaaaaaattacattaatgaACCACATGGTGACTCATCAAAGCGATCGCTCACTCTTATGTAAATTGTGTAATACACGATTTTTAAAACGAACagatttaattaatcatttaaagagCCACGCATATGATGACGCCACTTCCTATGAGGGTACAAATTtTGTGAATTTCACTACCCGAAAGCATGAGAAACAGGAAAATGTTAACGATCATTTTTATAACAATGATTGGGAAAGCCATAGTAACAttgcaattacaaaaaaaacattgcCACAATCGCAAAATACAAGCGCTAATAGTTCCTTAATTTCTGCTCCTTTGCGTGGCAGAGTTAGTCGCTTAAAGTTAAGTGATAATAGATATACCTTAACTGAAACGAAGCCGGATCATGGTGGTGACATACAACTTGTTGAGGGTCAAGAATTAGAGCACAGTCCAACAACCAACACTTTAACTACAGACCCGACTGAACATCAATTTCAGTTTCCAATTATAGATGAAAGTAAACCATTTGTTTGTCAACAATGTGGACTGGCTTTCGCACGAGAAAAAGCTTTATTGTCACATACAaagaaCCATCAAAAAGATACTGCCAACGAGTGTAATCAgtgcaatgaaatattttgggATGCAAACAGTTTGCAGGAACATATGAAAACACATCAATTTGAGGAAAGCAATTCTGAATATGATCCTGCTGATGGTGATTTAACACAGAGTGATTCCGAATCCGAACATGCTTATGGCGAATTCTATTGCAACGAATGTGGCTTGGCTTTTCATCGCAAGAACTTATTGAATCGTCATAAAAAGTTACACGAAGGatctaataaaacaaaaatgaatggagaagatggGAATAAAAGTGAACACCATTGTTGTTGTACTACATGCGGTGAAACGTTTGCTGAAGCTTTAGATCTTCTTGCGCATGCTGAAGTACATGCTCGATATCCACCTTTTAAatgTCTTCTATGTGGTGAATCATTTATCGAAGAGATCACTATAAAACGTCACATAGAGACGAAACATAGTGGAGAAATGACACAAAACTCCTGCATATTATGTGGAAAAGAATGTCGTGATCGTAAAGCTTTAATGAAACATTCATGGGATCACTCAAGAGAAAAATGTCACTCATGTTCCAAATGTGGCAAGAGTTTTTACAGTAAAGCTCGACTCAGACGGCACATGGCATCACATCGTGATAAAACCGTTTCATGTGATGTATGTCATGAAGAATTTCCCGATGGTCGTACCTTATCTAATCATCGACATTCACATAGTGTAAACTCTACTGGTAAATTGTTTCCTTGCAATGAATGTGGCAAAACATTTGGTTCAAGAAGCTCACAGCAAATACATGTTCGCATTCACACTGGTGAGAGACCGTATGGTTGTCGATTTTGTTGGAAAGCCTTTGCAGATGGAGGTACACTACGTAAACATGAACGTATACATACAGGGGAAAAACCATATGCTTGTTCAGTTTGTCCCCGTGCATTCAATCAACGTGTAGTGCTGCGAGAGCATATACGTTCACATCATTCTGGTTTAGATACGAAACGTGGTGTATATTTTTGCACTGTGTGCAGTGAGCAATTACCTTCATCTGGTGATTTGATGCAGCATCTAATTGAGCACAGTGATAAAAACACTGCCATGCAACGGCAACCaattGTTGGACCCCGAAAGTACAAAAGACGTAGAAAGTTGAAGCCACATGAATTGGAACACATGCGTGAAAAATCTTTCAATGAAAGCGATATTGATATATCGGATATAGACATGGATAATATGCAAGACATACTAAACATAAATGAATCTGAGACCAGTAAATCCTGTaatgctaaaaaatttaaatatagtaaaagcaACAGTTCAACTATAAGCAGTAATTTACAAGATGCACCTGgaagtgcaaataaaaaagataacatAGATATAAATGAAAGGAAAGTACGAAAACGCAACAGTTCTGTTAGCAGCTCGGATAAAAATTGGCAAACAAAATTGATCAATTCCACCACTAAATCTGAAGCTTATAAATCAATGCTGTCCAATGTTGAAAATACTTTGCAAACTATTGATACGCTTGTTGTGGATTATGATAAGGCTAATAGTGACACTTCAGACGAAGAATTTAGATTGAAATTGCctaataaaagaacaaattcaTCAGAATGTATAGCACAACGTACACAGCAAGTCAAGTTTGACAAGGGCGGAAATAAATACGGAAATGATACAGTGTTAACAACTCCAAATAAAACAAGGAATCGTAAAAGAAcagaaaaagtttcaaaaaatataagacCAAAAATGATACATACCGAAAAGCAACGTGTAAACAAAGCCGATAATCATAAAAAGCGtgcaaaaacttttataacacgtacagatacaaataaaactaataagacCAATGTAGAAATGCAAgacgaattatatatattgtcaaATAATATTGAACCGCTAAATCAAATCAATCCAAGTGCTATAGTCATAAAAGAGGAACGCCAAACTGATAAGTCTGAACATTATGCAGAACAATATGTGTGTCCAGATCAAATACAACAATCTTCTCGTAATTTATATGATGCACAACTTTTATTAGAAGCTGCTGCGCTGCGTAAAGATGTTTATGAAAAATTCAATCCAAGCGTTGTAAATGACTTGGAGGATATATTGCGTTCACCTCTGAAGTCAGAAAGAACAGAAAGGCAACGATTCACAAGTGAATCATCAACACACTACCTTGCAGATCAAACAGAactacatttacaaaattatattaaaatagaaacatcATCACCCGAATTGCGTGACATGTATCCCAGCAGTAGTAGCGGTAGTGTTAGTGTTGCAAATGATATGCAACATCACAGTAAAGGCGAACGCCGCTCAACTCGTAGCCGTTTAACTACCGTAAATCgcaaatttttagattttgaaACGGAATTACTTAATAAACCTAGTAGTTCATCCCAGAAGCGTGAGGtcactcaaaataaaaacaaacctaTAAAAAGCCAAAGAGAGAAGCTCAATTCAACACAAAATTCTTTtcttgattataataattataataatttaaatacaagcTCATCTAGTAACTCAACCTATTCGCCGATGTCTGCTGTTATAAACAGTATTAACCAAACTACAGAAACAACGCCAACAAAAATCGAACAGAAAAGATTCTTCGAGTGTGAAATGTGCTCACTAGTTTTTAGTGATCGTGCGCAGCTACTAGGACATGTGCCTATACATATTTAG
- Protein Sequence
- MEGRAYGINWLTAAVNDIKGSQLIAMQPEDAHLISNGVDEYIIKADEQDEANIQQIAAENLIFMASDGQMLAEYITAKDEQCSVVISPDDNSAFGVGTITAEDGIENHSDSESRFIDFGDTSPQIVTEEVITDDWVQRQGEEFVEIPAEQLIGSASQVLLDIEVPLPTAQDEYTTMRPYPCDFCSRRFRKKITLMNHMVTHQSDRSLLCKLCNTRFLKRTDLINHLKSHAYDDATSYEGTNFVNFTTRKHEKQENVNDHFYNNDWESHSNIAITKKTLPQSQNTSANSSLISAPLRGRVSRLKLSDNRYTLTETKPDHGGDIQLVEGQELEHSPTTNTLTTDPTEHQFQFPIIDESKPFVCQQCGLAFAREKALLSHTKNHQKDTANECNQCNEIFWDANSLQEHMKTHQFEESNSEYDPADGDLTQSDSESEHAYGEFYCNECGLAFHRKNLLNRHKKLHEGSNKTKMNGEDGNKSEHHCCCTTCGETFAEALDLLAHAEVHARYPPFKCLLCGESFIEEITIKRHIETKHSGEMTQNSCILCGKECRDRKALMKHSWDHSREKCHSCSKCGKSFYSKARLRRHMASHRDKTVSCDVCHEEFPDGRTLSNHRHSHSVNSTGKLFPCNECGKTFGSRSSQQIHVRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYACSVCPRAFNQRVVLREHIRSHHSGLDTKRGVYFCTVCSEQLPSSGDLMQHLIEHSDKNTAMQRQPIVGPRKYKRRRKLKPHELEHMREKSFNESDIDISDIDMDNMQDILNINESETSKSCNAKKFKYSKSNSSTISSNLQDAPGSANKKDNIDINERKVRKRNSSVSSSDKNWQTKLINSTTKSEAYKSMLSNVENTLQTIDTLVVDYDKANSDTSDEEFRLKLPNKRTNSSECIAQRTQQVKFDKGGNKYGNDTVLTTPNKTRNRKRTEKVSKNIRPKMIHTEKQRVNKADNHKKRAKTFITRTDTNKTNKTNVEMQDELYILSNNIEPLNQINPSAIVIKEERQTDKSEHYAEQYVCPDQIQQSSRNLYDAQLLLEAAALRKDVYEKFNPSVVNDLEDILRSPLKSERTERQRFTSESSTHYLADQTELHLQNYIKIETSSPELRDMYPSSSSGSVSVANDMQHHSKGERRSTRSRLTTVNRKFLDFETELLNKPSSSSQKREVTQNKNKPIKSQREKLNSTQNSFLDYNNYNNLNTSSSSNSTYSPMSAVINSINQTTETTPTKIEQKRFFECEMCSLVFSDRAQLLGHVPIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -