Tdal026646.1
Basic Information
- Insect
- Teleopsis dalmanni
- Gene Symbol
- -
- Assembly
- GCA_002237135.5
- Location
- CM026971.3:89010083-89013975[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 7.9 1.2e+03 1.6 0.3 1 16 65 80 65 82 0.89 2 20 0.0023 0.35 12.7 0.1 1 23 246 268 246 268 0.97 3 20 3.8e-05 0.0058 18.3 4.1 1 23 274 296 274 296 0.98 4 20 0.00016 0.025 16.3 0.2 2 23 326 347 325 347 0.96 5 20 0.31 47 6.0 2.4 1 23 421 444 421 444 0.96 6 20 0.0019 0.29 13.0 1.5 2 23 510 531 509 531 0.96 7 20 0.0054 0.83 11.5 3.6 1 23 538 561 538 561 0.93 8 20 0.00022 0.035 15.9 2.6 2 23 569 590 568 590 0.96 9 20 0.00028 0.044 15.5 3.7 1 23 664 687 664 687 0.98 10 20 0.92 1.4e+02 4.5 3.6 1 21 694 714 694 715 0.93 11 20 0.015 2.3 10.1 0.6 1 23 724 747 724 747 0.95 12 20 0.016 2.5 10.0 0.4 2 23 763 785 762 785 0.94 13 20 0.022 3.3 9.6 1.5 2 23 817 838 817 838 0.97 14 20 0.00026 0.04 15.7 0.9 2 23 927 949 927 949 0.94 15 20 0.01 1.6 10.7 0.4 1 23 986 1009 986 1009 0.95 16 20 0.00046 0.072 14.9 0.0 1 23 1038 1060 1038 1060 0.96 17 20 4.1e-06 0.00063 21.3 1.5 1 23 1066 1088 1066 1088 0.98 18 20 2.5e-07 3.8e-05 25.2 0.8 1 23 1094 1116 1094 1116 0.98 19 20 1.3e-06 0.0002 22.9 4.5 1 23 1122 1144 1122 1144 0.98 20 20 0.00075 0.12 14.2 0.0 1 22 1150 1171 1150 1174 0.91
Sequence Information
- Coding Sequence
- ATGGAAACTAAATTAGAAATCAAAGAGAGCTTTGATGAGTCCTGGTGCAGAACGTGCAATGAACGTACCAGTATCAGTTTTCTTCATTCTCTGGAAGAGCAAGTAGAAAACTGCCCAAGTCTTGCCGATATGTTACTTGAAATAGccaaaataaatatcaAAACAGAAGACGATAATAACGACTTACCTAGATATGTGTGCGGTAATTGCAGTTATAAACTCAAGAACGCCTATTCGTTTGTAGTGCAGGCGCAGcaagtaaataaacaattcattgAGAAACTGAATTCAAATGTCAGAAAAGTACATGTTAAGCAAGTGGACTGCCTGCAGGAAGCACCTATTGACATGGAGAGTATGgaaataaaacttgaaaaccTAGAAGAAACTGATGGTTACGATGCGTTTAAAGATATTGAATTCTCCTCGGAAACGGATGCAAACTTGATTGCTGATGTAAGTTTAAAACATTCAGAAGCAACGAAAACGAATGAAAGCACTTCTGTTAAAAGTATTATGGCAACAGAACCTATATTACCTACAAATCGGGATGAAGCATcttcTGTGACTGTTGATCCCATTACCGTTATGGATACACAGTGGCAGTCTGATAGCAATGAATCTAATGGTGCAAAGAATGATGATGATTCCGATAGTTGCGAAAAATTCGCTTATCGGCCAGTGAGAAAACGACGACGCGCTGCTAAAAATACAGCAGAATCAAATGAAGGAAGATTTCCATGCAACATTTGTGGCGAAACATTTGCTTGGAAGAATAGTGTACTACGCCATGAGAGATCCCATTTTGCTAAGCCACAATATGAGTGCTCCTATTGCGATCGAAAATTTTTTCGTAAGGACAAACTTAATGATCATACAAAGAAACATTTAAAACCAAATCAATCGAGAAAACCGCGTCATCCTGAATGGAACTTCGGCAATCGCTTATATTCTGACAAACCATTCCAAAAGATACAATGTAAAATCTGCGATATGATTTTTAACAACACATTTGCATTACGTAAACATTTAGCCGTACACTCCAATCCAGATACGTTACTACATTTAAAACTGGATAGTGACATTGTAAAAGAGTTTTTCACACAAACCGAAGATTTAAATGAGATTGTGGCTAGCATATGCAAGGACATTTCGCATCAACTACTGTCTAAATATGTTGTAGTAGTTAATGAATTTGGTTATGAAATGTGTCTCAGTGATTCCGATGTGGACTCAAAAGAAATCGATAAAGTAACGAAATATAAATGTGAATTGTGTAATGAGTTTTATTTGCGTAAGCATCTCGTTTTTGCACACATTAAAGAGAAGCACTCAACAGATCAACTGCCATATCGTTGTcttgtttgtaaattaaaatttgtctgTGAAAAGATGTATAAACTGCACACGGAAAGTCAATGCCGTTGTAAAGAGAAAAAGTACAAATGCGTCAAATGTCCAGGTAAATTCATGTGGctaaaaaatttagaagaacACAAGTGTTCCAATTGTAAAGAGGAAGAGTTGGTATGTAGCTACTGTGAAGAAACTTTTACGAAATTAAGTGACTTTCGATTTCATATGAATAAACACGATGTGGATGAGAGTTTATTTGATTGTACAATATGTGATCAACACTGCACCCAGGCAGATGAGTTGCGAcaacattttaatgaaaaacatgCACTTACAGGGCGTAAGATCCGATGCTGTCTATgtgaaaaaagttttacaaGCTTAACTCAACTCCGAGCACATCTACAACAACACGCAGATAGTTTGGTTGACATCAATTTAAATGAAGGatactttttcaaaatattttatccaCAAGGTTTCGTAGGCCGCGAAAATGAAGTCACTACTAATATTGCAGACGATTTTCTAACGAAAAGGTTATCACTTTTCTATATAACATTGGATGAggaatataatgaaatcgaCTTATATGACTCAGAGACAGATAATGAATGTCAAAACGTTGCGGTATATGAATGCAGCTTgtgcaaaaatatctttaacagGCGTAAACATTTACTGAAGCACCAAAATACTGAACACACAAATTCCGAATTACCTTATGTCTGTAAAcactgtaataataaatttgtttgtgatTATCTCTTACAAAATCATATGAGTCGCGACTgccttaatattaataaaaaatttcattgtgaAGAGTGCGGATCACGTTTTGTTTgggaagaaaatttaaaactacatATGCAAGCGAGACATCCTGCTAACAGAGTGCAGAAAAACCTACAGATAGCAAAGAACTTGCAATGTGACTTGTGTTATAAAGTCTTTATTTGGCCAAGAGATTTAACGCGGCATAAAAAGGAACAACATATGAGCAACGATGATAAATTAGTTAATGCGAAAGCAGTAAGAGCCGTGGGTATTGATGAATATTTATGTAAGCCAAATGGTACTAAGATTGCGCGTTGTATGATTTGCCAATATAAAACCAACAAAATTTCTGAACTTCAAACACATCTTCGTAATCATCGATACTTTTTGTCATTTACACAGCCTGTAGAAAGTATTTGTGCCTTGATTTATCCCGAAGAGCCACCAATGCAGGAGGAGATATTAACTAAACGTATTTTGTCTGATATTGCTAGACAAAAATTCGatcatttttattctattacaaATGAGGTGGGCTATGAATTGAACATTTTCAGTTCTGATACGGAATGTGAAGAATATAATGTGAACTCTGCTCAAGAATTTTCTTCTAATCAACAATCTATTGCAACAAAATTAAACTATTGTGACCTTTGTGGTATCTCATTCGAACGTAAATATAAACTATTCCAGCATCAACTTTTGAAACATAAATGGAATGAAGCACAACACGTGTGCAGCTGTTGTGACAGTAGGTTCCTGTCTGCTTCTAGTTTACTAACGCATTTGGACAATCAGTGTAAAAATAAGCATAAACgctatttgtgttttaaatgcCCTCGAAGATTTATGTGGAAGGATAACCTTATAATGCATTTACGTATTATACATTTAGAGACAGATGATTCACAAATTGAAGCTAAAATTAACTCAAGcagcaataaaagaaataaagctGTTGTAtcggataaaaaatatttgtgcgaACTATGTGGTTTTGCTGCAGCTAAACCATCCAATCTTGTCATACATATGAGGCGTCATACAGGCGAGAAACCATTTAAATGTGATTTTTGCGATAAGGCATTTCCAAATACATCTGATTTAAAGACACATCGTCAATCtcatactggtgaaaaaccaTATATCTGTAATACTTGTAATAAAGCTTTTCCACGTGCATACAAATTGCGCATACACATGCGTACGCACTCAGGAGAACGTCCATACATCTGCTCTTATTGCAACAAAAGCTTTACGCATTCGAAAAATCTAACCTTGCATGTGCGTCGACATACCGGTGAACGTCCATTTGTTTGCGGCATTTGTGGTCAAGGATTTATACAGGGTGCACAATTGCGAAAGCATCGCCAATTAGTTGGTCATCATGAAGATATAGAAcccaaaagaaaaacattactATTGGAATAG
- Protein Sequence
- METKLEIKESFDESWCRTCNERTSISFLHSLEEQVENCPSLADMLLEIAKINIKTEDDNNDLPRYVCGNCSYKLKNAYSFVVQAQQVNKQFIEKLNSNVRKVHVKQVDCLQEAPIDMESMEIKLENLEETDGYDAFKDIEFSSETDANLIADVSLKHSEATKTNESTSVKSIMATEPILPTNRDEASSVTVDPITVMDTQWQSDSNESNGAKNDDDSDSCEKFAYRPVRKRRRAAKNTAESNEGRFPCNICGETFAWKNSVLRHERSHFAKPQYECSYCDRKFFRKDKLNDHTKKHLKPNQSRKPRHPEWNFGNRLYSDKPFQKIQCKICDMIFNNTFALRKHLAVHSNPDTLLHLKLDSDIVKEFFTQTEDLNEIVASICKDISHQLLSKYVVVVNEFGYEMCLSDSDVDSKEIDKVTKYKCELCNEFYLRKHLVFAHIKEKHSTDQLPYRCLVCKLKFVCEKMYKLHTESQCRCKEKKYKCVKCPGKFMWLKNLEEHKCSNCKEEELVCSYCEETFTKLSDFRFHMNKHDVDESLFDCTICDQHCTQADELRQHFNEKHALTGRKIRCCLCEKSFTSLTQLRAHLQQHADSLVDINLNEGYFFKIFYPQGFVGRENEVTTNIADDFLTKRLSLFYITLDEEYNEIDLYDSETDNECQNVAVYECSLCKNIFNRRKHLLKHQNTEHTNSELPYVCKHCNNKFVCDYLLQNHMSRDCLNINKKFHCEECGSRFVWEENLKLHMQARHPANRVQKNLQIAKNLQCDLCYKVFIWPRDLTRHKKEQHMSNDDKLVNAKAVRAVGIDEYLCKPNGTKIARCMICQYKTNKISELQTHLRNHRYFLSFTQPVESICALIYPEEPPMQEEILTKRILSDIARQKFDHFYSITNEVGYELNIFSSDTECEEYNVNSAQEFSSNQQSIATKLNYCDLCGISFERKYKLFQHQLLKHKWNEAQHVCSCCDSRFLSASSLLTHLDNQCKNKHKRYLCFKCPRRFMWKDNLIMHLRIIHLETDDSQIEAKINSSSNKRNKAVVSDKKYLCELCGFAAAKPSNLVIHMRRHTGEKPFKCDFCDKAFPNTSDLKTHRQSHTGEKPYICNTCNKAFPRAYKLRIHMRTHSGERPYICSYCNKSFTHSKNLTLHVRRHTGERPFVCGICGQGFIQGAQLRKHRQLVGHHEDIEPKRKTLLLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -