Tdal015539.1
Basic Information
- Insect
- Teleopsis dalmanni
- Gene Symbol
- -
- Assembly
- GCA_002237135.5
- Location
- CM026970.3:129665411-129669296[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 3.8e-05 0.006 18.3 0.6 1 23 119 142 119 142 0.95 2 14 0.00049 0.076 14.8 0.4 2 23 148 170 147 170 0.94 3 14 5.4e-06 0.00083 21.0 5.6 2 23 180 202 179 202 0.95 4 14 3.1e-05 0.0048 18.6 1.5 2 23 303 325 302 325 0.95 5 14 0.00025 0.038 15.7 12.5 2 23 463 484 463 484 0.98 6 14 1.4e-05 0.0022 19.6 3.3 1 23 490 513 490 513 0.93 7 14 4.7e-05 0.0073 18.0 0.4 1 23 518 541 518 541 0.95 8 14 0.0015 0.23 13.3 5.9 1 23 551 573 551 573 0.96 9 14 0.00014 0.022 16.5 4.3 1 23 578 600 578 600 0.97 10 14 3.5e-07 5.5e-05 24.7 0.2 1 23 606 628 606 628 0.96 11 14 8.1e-06 0.0013 20.4 0.5 1 23 634 656 634 656 0.98 12 14 1e-06 0.00015 23.3 2.7 3 23 664 684 663 684 0.99 13 14 3.6e-08 5.5e-06 27.8 1.2 1 23 690 712 690 712 0.99 14 14 0.035 5.5 9.0 0.2 1 23 717 740 717 740 0.97
Sequence Information
- Coding Sequence
- atgagcTCCTCAATAAGTGGCAAGTTGGAACTGGACCGCATATGTCGTGTCTGCTTGCAGGAAAAATTcgatttagttttaatttttgatgagACGTTTGCTGTTGATGGTGTAACAATGTCACAATTACTGTCTGAATGCACGAGATATAAAGTCGAACGGTTCGATAATATGCCTCATCAAATTTGTGGTAACTGCATGGAAACGGCAAAGATTGCCTTCAAGTTTAGGAGACAAGCTGAAAAGTCTTATCGCATACTAACCAATATGTTTGATTCAGTTGCTGATATAAATCCAAACTATACGCCTCAATCTTCTATGGACAACTCAACACAGACAGAAAAAATATCGATACATCCATGCGAGATGTGTGGACAAAAGTTTTTTGATTCCTCAGACTTAAGGGAACACCGTTTGGTAGAACATCGTGGTAACACTAAAGAATGTAGCGTTTGTGGTGAAAAATTCATGCGTCTTCGTCAACTGCGAAGCCATGTGATGCAAGTCCATCCTAAAGAGGGACTTATGTCAGAGATTGTGTGTCGCTTATGTCATCGAAAGTTTTCACGTAAAGATCATCTAAGGCGACATATGCGTAACATTCACAAAGTCAACTACGAAAAcaCAAAAACTTCACTAGAGGAACCAGAAATTGATGTAGAAATTGGTAAAAATGTAGATACAACAACAGCTGCGCCGCTTTGGCCAAACTTCAATGATTACGAGCATAATATGGATAAAGACATGTTTGAACCTAATCCAATATCAAGCGATGATGATCACTTCGATTATAGTGTTGCTGACAAGATTTTAGCTGCTGAACCTGAGGTTATTATAAAAGttgaatctaatgaaaataattttcaatcaacTACGGAAAAATCGACCAGTAACACTGATGAAATTTCGTGCAATTTATGTAAACGTACTTTTACTAGTAAAGGGTTTTTAAAAcgacatttaataaaaatacacaaacagGATTTAGAAGATTCAAAAGAATTACTGGAAGAGCCAGAAATCGACTTGCAACCTAATGAAATTAGTACAAAGAAGGAGGATAATTTAGATGAGTCTAATTCATTAAAAGAAGACAACAATTGTGCAACTGATTCAAAAtcgatatttgaaaattatattaaagttgaacCAGAAGATGCCAGCAATCCGTTAAAAGACTGTATTAAACCTGAAACAAATGATATTGCTTCAATAACAAGCAATAGTTTATCTAATAACATACAAATCAGTGAACTAccgatatataataattctgtTATTGATGAGCATAGACATAAGGTTATAATTGTAAAGGAATACTTAGAGCTACGCGCTAAAGAGGAAAAACATCGTAACAAAAGTGGAGAAAACAATAGGGAGGCAAATCGGTGTCATGAATGTAATCGCACATTTTCCCGACATTGTCATTTAAGGCGACATATGTTAACACATCTCGCGGAGAAACCTCATGCTTGCCCACATTGTTCTAAACGCTTTGCTAGGAGTGATCATCTAAAAGCACATGTACTGAATGTACATAATGCTAAGGAGTTTAAGTGTGATAAATGCGATGCTGCATTTGCAAAGAGTGACTCTTTAGAACGTCACAAAGAAATCAAACATGGAGATGAACCCAACCTGCATAAAATTCATAGTTGTGATTTTTGCAATAAgaaatttatgacaaaaaattatttacgcaaACATAGATTATTGCATACTGATCGAATTTTTGCATGCAAACATTGTGAAGAGACATTTAGAGATAGAAAACAATTTCGAGAACATGAAAAAACGCATAGTGGTGAACGTAATTATTTATGTTCAATATGTGGTGAGAGTTTTGTTCGTAATGATTACCTTGTTGTACATATGAGAAGACATACAGGTGAAAAACCATACAAATGTCAGTACTGTGGCAAAGGTTTTCCTCGTGCAACTGATGTAAAAGTTCATGAAAGatatcATACAGGCACAAAACCAAATCTATGCACTCTTTGCGGGAAACGTTTCCACCGTGCTTATAATTTAACTATACATATGCGAACTCATACTGGAGAACGTCCATTCAAATGCGATCAATGTCCAAAAAGTTTTACACAGAGTAACGACTTAAAAGCGCATATACGTCGGCATACTGGAGAGCGTTTTAAATGTAATCAGTGTGATGCTGGGTTTTTGCAAATGTATGGCCTGCGACAGCATGCACTAACCGCACATGGGACACATATGGAGTCATCAACAGGTCGCTTACAAAAATTTCATCCTCTGCCTGCGTTACAAACATTAGCACAACCACAAATAGAAATGCCAGCTCAAATGCCAATGGCACAAACTGAACTAAACATGGTTATGGAGCAAAAGCAACCCGAAACTACACTTCAAGCTCAATATCCATATATGGAAACTTCCTag
- Protein Sequence
- MSSSISGKLELDRICRVCLQEKFDLVLIFDETFAVDGVTMSQLLSECTRYKVERFDNMPHQICGNCMETAKIAFKFRRQAEKSYRILTNMFDSVADINPNYTPQSSMDNSTQTEKISIHPCEMCGQKFFDSSDLREHRLVEHRGNTKECSVCGEKFMRLRQLRSHVMQVHPKEGLMSEIVCRLCHRKFSRKDHLRRHMRNIHKVNYENTKTSLEEPEIDVEIGKNVDTTTAAPLWPNFNDYEHNMDKDMFEPNPISSDDDHFDYSVADKILAAEPEVIIKVESNENNFQSTTEKSTSNTDEISCNLCKRTFTSKGFLKRHLIKIHKQDLEDSKELLEEPEIDLQPNEISTKKEDNLDESNSLKEDNNCATDSKSIFENYIKVEPEDASNPLKDCIKPETNDIASITSNSLSNNIQISELPIYNNSVIDEHRHKVIIVKEYLELRAKEEKHRNKSGENNREANRCHECNRTFSRHCHLRRHMLTHLAEKPHACPHCSKRFARSDHLKAHVLNVHNAKEFKCDKCDAAFAKSDSLERHKEIKHGDEPNLHKIHSCDFCNKKFMTKNYLRKHRLLHTDRIFACKHCEETFRDRKQFREHEKTHSGERNYLCSICGESFVRNDYLVVHMRRHTGEKPYKCQYCGKGFPRATDVKVHERYHTGTKPNLCTLCGKRFHRAYNLTIHMRTHTGERPFKCDQCPKSFTQSNDLKAHIRRHTGERFKCNQCDAGFLQMYGLRQHALTAHGTHMESSTGRLQKFHPLPALQTLAQPQIEMPAQMPMAQTELNMVMEQKQPETTLQAQYPYMETS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -