Tdal029601.1
Basic Information
- Insect
- Teleopsis dalmanni
- Gene Symbol
- -
- Assembly
- GCA_002237135.5
- Location
- CM026971.3:132245354-132258157[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0016 0.24 13.2 0.1 3 23 124 144 122 144 0.96 2 19 1e-05 0.0016 20.1 2.4 1 23 150 172 150 172 0.99 3 19 4.2e-05 0.0065 18.2 3.4 1 23 178 200 178 200 0.98 4 19 3.2e-06 0.00049 21.7 0.5 1 23 206 228 206 228 0.98 5 19 7.9e-05 0.012 17.3 6.0 1 23 234 256 234 256 0.98 6 19 0.0023 0.36 12.7 3.6 1 23 262 284 262 284 0.97 7 19 0.00029 0.045 15.5 0.8 3 23 290 310 288 310 0.98 8 19 0.00072 0.11 14.3 0.2 1 22 325 346 325 349 0.91 9 19 0.0053 0.83 11.5 1.2 1 23 466 488 466 488 0.97 10 19 2.4e-06 0.00037 22.1 3.8 1 23 494 516 494 516 0.98 11 19 3.5e-06 0.00053 21.6 4.8 1 23 522 544 522 544 0.99 12 19 2.4e-05 0.0037 18.9 1.1 1 23 550 572 550 572 0.98 13 19 1.3e-05 0.0021 19.7 4.4 1 23 578 600 578 600 0.99 14 19 2.7e-05 0.0042 18.8 2.3 1 23 606 628 606 628 0.97 15 19 4.6e-05 0.0071 18.0 2.7 1 23 634 656 634 656 0.98 16 19 7.5e-07 0.00012 23.6 2.4 1 23 662 684 662 684 0.98 17 19 0.0044 0.68 11.8 1.7 1 23 690 712 690 712 0.96 18 19 1.9e-05 0.0029 19.3 0.9 1 23 716 738 716 738 0.98 19 19 0.00019 0.03 16.1 0.5 1 20 753 772 753 777 0.92
Sequence Information
- Coding Sequence
- ATGTGCGATTCTATGAAAGATGAAAATATAACGATGGTGTCGAAAACTACTGTTCTCAAAAGTTTGGGTGATGCCATTATAAACGATCAGATATTTGTCAAAGATAGCACACAAGAAAATgtaacacaatatataaaagatgaAATACCTGAAACAACTACAGCgaagtttttaatagaaaacacTTTTATTACGATAGAAAATTATACCATAAAAAGAGAGCCAGAAACTGTTGTTACTCAAACATTAGGCAATGGGTCTATACCTGATTCATCACGAATTGAAAGTGACGGTGTAGTACAAATCACAATAAAAGATAAAGTAATTGAGCCAGTTTTAaaAAAGCATAAAGTGGAAAGATGTCTTGCTTGTGACAtttgtggaaaaaaatttttgtcattgGGTCCTTTAAAAGTTCATCTCCGCTCTCATACTGGGGAAAAACCCTACACTTGTACGGAAtGTAATCAGAATTTCTTCGTTAAGAGCTCACTTACACTTCATATGAGGCGACATACCGGAGAGAAACCCTACACATGCAAGGAATGCAATAAAAGTTTTGCCGTCAAGCAGGCACTCAAACACCATTCAAGACAACATACAGGTGAAAAGCCCTATAAATGTGATGAAtGTGATAAAACTTTTGCTGTTAAGCAAGGACTAAATCTTCATATGCAGCAACATACTGGAGGAAAACATTTTACATGCAccgaaTGCAAACAACATTTTGCGCGTAAGCATGCACTCAATCTTCATATGAAACGGCATACTGGTGAAAAGCCACACGTTTGCAATGAATGTGGAAAATGTTTTCTACGCGCTATTGAGTTACGTTACCATAGTAAAACTCATATACGTCCATTTGGCTGCGATCAATGTGAGGAAAAATTCAAAACCTTCAAACAaTTAGAGCAGCATATCAAAATTCATTCTGCAATACGCAAACGTAAATATAgagttcaaaaacaaaaattcaaatgcaaAGAATGCAATGCGATGTATGAGACAAAGGAAGGACTTAAAAATCATTATGAAATCGGAGTTCATATAGaaaatgaaAGTATAAAGATGGGGACGACAGCTAATGATGATCAGTCATTCGAAAATGAAGttattgtgaaaaaatttaaaaaagataaagtaCGCAAAATAAGCACAGAGCAATTGTTATCAGAAAACGAAGCTGTTATAACTCTAGAAAATAAGACCATGAAAACGGAACCAGACGCTACTGTTATTGAGGCTTTACCTAGTACAATTATAGACGATCAAATTTCTTTCGAAGATGTCGTTgctataaaagaattaatagaAGAGGAACGTATGGAAACAACCACAAAGGAATTATCACAATATAATGAATTGGATTCGTaTATGCATTTGGAGGAGCGTTATTTTGCTTGTGACTTTTGTGAAAAGAAATTACCCAAATTGAGTGTACTGAAAAAGCATCGTCGTTCTCATACCGGCGAAAAGCCATATAACTGCCTTGAAtgcaataaatgtttttctgtTAAGGAGTCACTTAATCGTCATATGAGGCAACACACTGGTAAAAAACCTTTCACATGtactaaaTGCAAACAATGTTTTACTCGTAAGGAAGGCCTCGAGATTCATATGAGACGGCATACTGGAGAAAAACCATATTCATGCACTGAGtgtacTAATAGTTTTGCTGTTAAGCAGGCACTTAAACGTCATATGAGGCAACATACTGGTGAAAAGCCCTATAAATGTACCGAATGTAATCAAAGTTTTTCTGTTAAGGAGACACTCCATCGTCATTTAAAACGACATACAGGGGAAAAATCCCACATATGTACAGAATGTAATAAAAGATTTGCTGTTAAGAAGGaacttaatttacatttaaggCGACATACTGGCGAGAAACCATACAAGTGTACTAAAtgTAATCAAAGTTTCACGGCTAAGCGTTCACTCTACAATCACATGGCGCGGCACACTGGTGAAAAACCTTTCACATGCACTGAAtgtaataaaagtttttctataaaaagttCACTTAATCTCCACATGAAGCGGCATACTGGTGAAAAACAACATGTTTGCAATGAATGTGGGAAACAATTTCTACGCGCTTTTGAATTACGTTATCATAGTAAAATTCATATTTGTCTATTTACCTGTGATCAGTGtgaaacaaaattcaaaactaataaggaACTTGAAGAACATGTCAGAATACATTCATCTCAAAACAGACGAGAAAATGAATGTCAGGAACATAAATTCAAGTGCAAAGAATGCAATGCGACCTATGCGACAAAGGAAGAACTTAAAAATCATTATGGAATAAGAGTTCATATGGataaatatccTAACAGCAGCCTTAAAGAAGCAATCACGGAGAAAATATTACCAGAAAATGAAGTGTGCAAttcattagaaaataaaagtttaaaggCGGAGCGTTTAATCGAAGATGAAGTTGTTGgagaacaatttataaaaaatgaattaccTGAAAGAAGTACAGAGGAATTGTTATTAGAAAACGAagtatatactattataatgtTAGGAAATGAGAGTATAAGAATGAGACCTGACCACATTCCGTTTAAAGATGACGTTACTATACAACAACTTATAAAAGAAGAAGCAATTGAAACAAatGAATATCCCAGCAGCAGCCTTAGAGAAGCAATTACGGAGAAAATATTGTCAGAAAATGAAGTGCCtaattcaatagaaaataaaagtataaagatGGAGTCGAATATTACAGGTGATCAAACATCAATTGAAGATGAAGTTGTTGTTgagcaatttataaaaaatgaagtacCTGAAATAAGTACAGAGGAATTGTTATTAGAAAACGAAGTATATACTATTACAATGTTAGAAAATGAGAGTATAAGAATGAGGCCTGACCAAATTCCGTTTAAAGATTGCGTTACAAAACAACAACGTATAACAGAAGAAGCAATTGAAACAAGTACAAACCAATTATTATTAGAACATGAAGAAACCTCTAGActtgaaaaaattaatctaaaaatcgAACCAAATTTTACTGTTCGTGAACCTAAACTTGATGATATTACAGATGaacaagaatttataaaaaatgaagtacAGTATGACCTCGATTAA
- Protein Sequence
- MCDSMKDENITMVSKTTVLKSLGDAIINDQIFVKDSTQENVTQYIKDEIPETTTAKFLIENTFITIENYTIKREPETVVTQTLGNGSIPDSSRIESDGVVQITIKDKVIEPVLKKHKVERCLACDICGKKFLSLGPLKVHLRSHTGEKPYTCTECNQNFFVKSSLTLHMRRHTGEKPYTCKECNKSFAVKQALKHHSRQHTGEKPYKCDECDKTFAVKQGLNLHMQQHTGGKHFTCTECKQHFARKHALNLHMKRHTGEKPHVCNECGKCFLRAIELRYHSKTHIRPFGCDQCEEKFKTFKQLEQHIKIHSAIRKRKYRVQKQKFKCKECNAMYETKEGLKNHYEIGVHIENESIKMGTTANDDQSFENEVIVKKFKKDKVRKISTEQLLSENEAVITLENKTMKTEPDATVIEALPSTIIDDQISFEDVVAIKELIEEERMETTTKELSQYNELDSYMHLEERYFACDFCEKKLPKLSVLKKHRRSHTGEKPYNCLECNKCFSVKESLNRHMRQHTGKKPFTCTKCKQCFTRKEGLEIHMRRHTGEKPYSCTECTNSFAVKQALKRHMRQHTGEKPYKCTECNQSFSVKETLHRHLKRHTGEKSHICTECNKRFAVKKELNLHLRRHTGEKPYKCTKCNQSFTAKRSLYNHMARHTGEKPFTCTECNKSFSIKSSLNLHMKRHTGEKQHVCNECGKQFLRAFELRYHSKIHICLFTCDQCETKFKTNKELEEHVRIHSSQNRRENECQEHKFKCKECNATYATKEELKNHYGIRVHMDKYPNSSLKEAITEKILPENEVCNSLENKSLKAERLIEDEVVGEQFIKNELPERSTEELLLENEVYTIIMLGNESIRMRPDHIPFKDDVTIQQLIKEEAIETNEYPSSSLREAITEKILSENEVPNSIENKSIKMESNITGDQTSIEDEVVVEQFIKNEVPEISTEELLLENEVYTITMLENESIRMRPDQIPFKDCVTKQQRITEEAIETSTNQLLLEHEETSRLEKINLKIEPNFTVREPKLDDITDEQEFIKNEVQYDLD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -