Tocc061994.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Teleogryllus occipitalis
Gene Symbol
Kr_1
Assembly
GCA_011170035.1
Location
BLKR01001571.1:13183-78990[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.93 6.8e+02 4.1 1.4 3 23 173 193 172 193 0.97
2 17 7e-05 0.051 17.1 0.2 1 21 199 219 199 220 0.97
3 17 3.5e-05 0.026 18.0 0.7 1 23 240 262 240 262 0.99
4 17 0.16 1.2e+02 6.5 0.4 1 16 268 283 268 284 0.94
5 17 8.8e-05 0.064 16.8 0.8 1 23 346 368 346 368 0.99
6 17 3.1e-05 0.022 18.2 2.7 1 23 374 396 374 396 0.99
7 17 3.7 2.7e+03 2.2 0.4 1 14 402 415 402 416 0.86
8 17 0.0047 3.4 11.3 1.5 1 23 444 466 444 466 0.98
9 17 0.008 5.8 10.6 3.8 1 23 488 510 488 510 0.99
10 17 0.00039 0.28 14.7 0.3 1 21 516 536 516 537 0.96
11 17 5.5 4e+03 1.7 4.2 1 23 570 592 570 592 0.97
12 17 0.82 6e+02 4.3 0.3 1 17 598 614 598 615 0.94
13 17 0.35 2.5e+02 5.5 5.5 2 23 627 648 626 648 0.97
14 17 3.4 2.5e+03 2.3 0.6 1 17 654 670 654 671 0.91
15 17 0.00047 0.34 14.5 0.2 1 23 691 713 691 713 0.99
16 17 0.00013 0.096 16.2 0.9 1 21 719 739 719 740 0.97
17 17 0.0027 2 12.1 1.9 1 20 755 774 755 776 0.95

Sequence Information

Coding Sequence
ATGGCGATGATCAGATTACCCCACTTCTGTGGGATTGTTCGCCCGCGGGCCTTCGCCGATGCAGCGTGGGTGCAGGACAGCGGCGGCGTCAGCGCGGGAGGAACGCACTTCGCCAGCGTCTTCTTCAAGGAGCAACCACTCGGCCCggaccccggccccgccccggtgcccggcccggcgcccgcgccaggccccgcccccggcagCGGCCTCGCCCCAGCGCGCCAGGGTAAGCAGCTGCTCGTTTCTCTGCTGCGCAGGGGCGGATCCACGGGGACCATGGCCAAACCCCTCTACTCCCAGCCaaaaCACCGCTCCTCTTCCGTGGGGCTGACTCGCCAGGCAGCGGGGCCACACCGGTTGACCGCAGGTAAGCGCTCGGCTCGGGCACGCCGAGTGGCCCGCTCGCTGGAGCAGCCCAGACCCACCCCTCAGCGTGCACCGGCAGCAGCCAGGGCTCAACGGCCCGGCAGATGCGGCTACAGCGCCCTTCAAATACATCCTTATCGAAGACTTtgcagccACTGCGGCTACGCCACCAACTGCCCTTCCGTCTGGGCCAcgcaccagcgcgtgcacacgggggagaagccttacaagtgcacgATCTGCCCCTTCTCTGCGTCGCAGTCCTACAACTTAAAAGTGCACTTGCGGGCTCTTCGCGCCAGGGCTGCGCGCCGtcggacggcgacggtggcggcgcgcggcggccgcttccagtgcagcGACTGCGGCTACGCCACCAACGAGTCCTACTATTGGACCAGGCACCAGCGCGTGCACTCGGGCGAGAAGCCGTTCAAGTGCACGCTCTGCCCCTACGCTACGACGCATTCCTGGAACTTACATGGGGTGTTCGTGGAACGTCTGCGCTGcgcgggacggcgacggtggcgccgcgcggcggccgcttccagtgcagccACTGCAGTTACGTCACCAACAAGTCTTCTAATTGGACCACGCACCAGGGGTGTTCGCGGAAGATCTGCGCGGCGAGGGACGGCGTCAGTGACGCCGCGAAGCGGGCGTTTCCAGTGCAACCTCTGCGGCTACGCCACCAACGAGTCCTACTATTGGACCAGGCACCAGCGCGTGCACTCGGGCGAGAAGCCGTTCAAGTGCACGCTCTGCCCCTACGCTACGACGCATTCCTGGAACTTACATGTGCACATGCGGATACACACCGGGGAGAAACCTTACCAGTGCACGGTCTGCTCCTTCTCCGCGTCGCAATCAAGTGGCGGCTTATCGCCGCGACGCGTCGTCTACGCCAGGGGGGGTGCATGGcgcgggacggcgacggtggcgccgcggggcggccgtTTCCAGTGCAGCCATTGCGTCTACGCCACCAATGATTCCTTGGATTGGACCAGGCACCAGCGCGAACACAGGGATGTCCTTGCGGGTTCGGCGcggatggcgacggcgacggtggcgccgcgtgGCGGCCGCTTCCAGTGCGGCCACTGCGGCTACAGAACCGAGTGCGCCAGCTTCTTGGAAAGGCACCAGCGCGTCCACACCGGCGAGAGACCCTACAAGTGCACGCTCTGTCACTTCGCTACGGCCCAGCCCGGGAACTTAAATAGGCACGTGAAGTTACCCCAACTGGACGCCCCCTCCCCTTCTGGGCGCCACTGTTTCCCTCTGGGGAGTGCAGGGcgcgggacggcgacggtggcgccgcggggcggccgcttccagtgcagccACTGCTGCTACGCCACCGATGCCGCCCATATGTGGGTCaggcaccagcgcgtgcacacgggcgagaagcctTTCCAATGCACGCTGTGCCTTTACGCTACATCGCAGCACGCCAACTTAAAGTCGCTGCTGACTCTGGTGCCCATGGAGCCGCTGATTCAGTGCGGCCACTGCAGCTTCTCCACCACCAAGACGTACTGTTGGTACCggcaccagcgcgtgcacacgggcgagaagccgCACAAGTGCACGGTCTGTGCCTACGCCACGTCGCAGCTCTGCAACCTAAGGGGTGTTCGAAGGACGTCTgcgcggcgtgggacggcgaagGTGGCGCCACGAGCcggccgcttccagtgcagcGACTGCAGCTACACCACCAACAGCCCCTCCATCTTGGCCGCGCACCAGCGCGTGCACTCGGGCGAGAAGCCTTACCAGTGCACCCACTGCACCTTCTCCGCAACGCAGCTCGGCAACTTGAAAAGGCACATACGGGATGcacggcgcgggacggcgacggtggcgccgcggggcggccgcttccagtgcagccACTGCAGCTACGCCACCAACAAATCTTCTCATTGGACCAGACACCTGCTCGGGATATGGCGAGTTCTGTGCTGCGCGGGATGGAaacggtggcgccgcggggcggccgcttccagtgcagccACTGCTCCTATGCCACCCAGAGCGCCTCTGGTTGGGCCAGGCACCAGCGCGTGCACGCCGGCGAGAAGCCTCACAAGTGCCCGGTCTGCCCCTACGCCGCGGCACATTCCTGGAACTTGA
Protein Sequence
MAMIRLPHFCGIVRPRAFADAAWVQDSGGVSAGGTHFASVFFKEQPLGPDPGPAPVPGPAPAPGPAPGSGLAPARQGKQLLVSLLRRGGSTGTMAKPLYSQPKHRSSSVGLTRQAAGPHRLTAGKRSARARRVARSLEQPRPTPQRAPAAARAQRPGRCGYSALQIHPYRRLCSHCGYATNCPSVWATHQRVHTGEKPYKCTICPFSASQSYNLKVHLRALRARAARRRTATVAARGGRFQCSDCGYATNESYYWTRHQRVHSGEKPFKCTLCPYATTHSWNLHGVFVERLRCAGRRRWRRAAAASSAATAVTSPTSLLIGPRTRGVRGRSARRGTASVTPRSGRFQCNLCGYATNESYYWTRHQRVHSGEKPFKCTLCPYATTHSWNLHVHMRIHTGEKPYQCTVCSFSASQSSGGLSPRRVVYARGGAWRGTATVAPRGGRFQCSHCVYATNDSLDWTRHQREHRDVLAGSARMATATVAPRGGRFQCGHCGYRTECASFLERHQRVHTGERPYKCTLCHFATAQPGNLNRHVKLPQLDAPSPSGRHCFPLGSAGRGTATVAPRGGRFQCSHCCYATDAAHMWVRHQRVHTGEKPFQCTLCLYATSQHANLKSLLTLVPMEPLIQCGHCSFSTTKTYCWYRHQRVHTGEKPHKCTVCAYATSQLCNLRGVRRTSARRGTAKVAPRAGRFQCSDCSYTTNSPSILAAHQRVHSGEKPYQCTHCTFSATQLGNLKRHIRDARRGTATVAPRGGRFQCSHCSYATNKSSHWTRHLLGIWRVLCCAGWKRWRRGAAASSAATAPMPPRAPLVGPGTSACTPARSLTSARSAPTPRHIPGT*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
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90% Identity
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80% Identity
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