Tocc130565.1
Basic Information
- Insect
- Teleogryllus occipitalis
- Gene Symbol
- -
- Assembly
- GCA_011170035.1
- Location
- BLKR01009202.1:151692-153059[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.1e-06 0.00081 22.7 2.8 1 23 73 95 73 95 0.98 2 12 0.86 6.3e+02 4.2 1.4 1 23 100 122 100 122 0.91 3 12 0.00037 0.27 14.8 6.1 1 23 128 150 128 150 0.98 4 12 5.7e-07 0.00042 23.7 0.1 1 23 156 178 156 178 0.97 5 12 1.8e-06 0.0013 22.1 0.9 1 23 184 206 184 206 0.97 6 12 6.7e-07 0.00049 23.4 0.6 1 23 219 241 219 241 0.98 7 12 3.7e-05 0.027 18.0 0.1 1 23 247 269 247 269 0.98 8 12 2.4e-05 0.017 18.6 0.0 1 20 275 294 275 296 0.94 9 12 1.2e-06 0.00088 22.6 3.0 1 23 308 330 308 330 0.99 10 12 5.7e-07 0.00042 23.7 0.1 1 23 336 358 336 358 0.97 11 12 3.1e-05 0.023 18.2 0.1 1 23 364 386 364 386 0.96 12 12 0.36 2.7e+02 5.4 0.1 1 23 391 412 391 412 0.87
Sequence Information
- Coding Sequence
- ATGATTGAAGGAACGGGGTGTTTTGCAGGTGGCACGTGCGGGCAGTGGGAGCTGCCGCCCAGAAGGGAGcgtcgggcgggcggcgcgacggccgAGGCGAGGGCTGCGCCGGTGTCTCCGCTGACGGGCGTCGAAGGCGAGGCGGCGCCTGCGTCTGCCCGCGGGGACGACGCCAAGTGCTTCGCGGAgagctcgtcgccgccgccgccgcgccgccacgagTGCCCCGTGTGCCGCAAGAGCTTCAGCTACAGCTCGCACCTGGCGGCGCACAGCCGCatgcacgcggcgcggcgcttccgcTGCGAGGCGTGCCCCAAGGCGTTCTTGTGCCGGCAGAGCCTGGACCAGCACGCGCGCACCCACTCCGAGCAGCGGCCCTTCCACTGCGAGGTGTGCCAGGAGCGGTTCCTACGCAAGGAGCACCTGCAGCGCCACACGCGGACACACACAGGGGAAAGGCCCTTCGCGTGCGCCCTGTGCGACCGCGCGTTCATCCAGAAGGACGGCCTCGTCAAGCACATGCGCACGCACTCCGGGGAGCGGCCGCACGTGTGCCCGGTGTGCGGCCGGACCTTCTCGCAGAGGAGCGGTTTGGTGTTCCACATGCGCTCGCACGCAGGGGAGGTGGCGCCGCAGGTGCTGCTGGCGCTGTTCGAGTGCGAGGTGTGCCGGAAGCGGTTCGCGCGCAAGGAGCTCCTCCAGAAACACGCCAGGGTGCACGCAGGGGGGAGGCCCTTCGCTTGCGACATGTGCGAGCAGGAGTTCGCCGAGAAGGACGGCCTCGTCGAGCACATGCGGACGCACCCCGGGGAGCGGCCCTACGCGTGCGAGGAGTGCGGCAAGGCCTTCGCGCAGAGGAGCGGTTTGGcggcgcacgcgtgcgcgcgcaccGGGGAGGAGGCGCCGCCGAGGGCGGTGTTCCAGTGCGAGGTGTGCCAGGAGCGGTTCGGGCGCAAGGAGCACCTGAAGCGCCACACCCGAATACACACAGGGGAAAGGCCCTTCGCGTGCGCCCTGTGCGACCGGGCGTTCATCCAGAAGGACGGCCTCGTCAAGCACATGCGCACGCACTCCGGGGAGCGGCCGCACGTGTGCGAGGTGTGCGGCCGGGCATACGCGCAGAGGAGCAGCCTGGTGGGGCACATGGGCTCGCACGCCGGGGAGGTGTACGAGTGCGTGGTGTGCCGGAGGAGCGTGCGCAGGGAGGAGTTCGCGAGCCACCTGGGCGCGCACCCGGCCGACGCGCCCTGCGCCTGCCCCGTGTGCCGCCAGAGCGTCCCCGTGGGGCAGTTGCCGGCGCACCTGCGCGCGCACGCCGCCCAGGGAGGTTCGGGCTGCCGCGGGGCGACGCAGGTGGCAGAATAA
- Protein Sequence
- MIEGTGCFAGGTCGQWELPPRRERRAGGATAEARAAPVSPLTGVEGEAAPASARGDDAKCFAESSSPPPPRRHECPVCRKSFSYSSHLAAHSRMHAARRFRCEACPKAFLCRQSLDQHARTHSEQRPFHCEVCQERFLRKEHLQRHTRTHTGERPFACALCDRAFIQKDGLVKHMRTHSGERPHVCPVCGRTFSQRSGLVFHMRSHAGEVAPQVLLALFECEVCRKRFARKELLQKHARVHAGGRPFACDMCEQEFAEKDGLVEHMRTHPGERPYACEECGKAFAQRSGLAAHACARTGEEAPPRAVFQCEVCQERFGRKEHLKRHTRIHTGERPFACALCDRAFIQKDGLVKHMRTHSGERPHVCEVCGRAYAQRSSLVGHMGSHAGEVYECVVCRRSVRREEFASHLGAHPADAPCACPVCRQSVPVGQLPAHLRAHAAQGGSGCRGATQVAE*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -