Tocc047322.1
Basic Information
- Insect
- Teleogryllus occipitalis
- Gene Symbol
- -
- Assembly
- GCA_011170035.1
- Location
- BLKR01001002.1:132415-154483[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.1e-05 0.0077 19.7 1.6 1 23 174 196 174 196 0.98 2 11 0.0018 1.3 12.7 0.3 3 17 204 218 202 219 0.94 3 11 4e-06 0.0029 21.0 0.1 1 23 438 460 438 460 0.96 4 11 1.1e-05 0.008 19.6 0.1 2 23 467 489 466 489 0.94 5 11 0.0032 2.4 11.8 0.0 1 23 495 518 495 518 0.94 6 11 1.5e-05 0.011 19.2 0.3 1 20 526 545 526 548 0.93 7 11 8.4e-05 0.061 16.8 0.1 1 23 554 576 554 576 0.97 8 11 1.5e-07 0.00011 25.5 0.6 1 23 582 604 582 604 0.98 9 11 1.3e-05 0.0094 19.4 0.3 1 23 610 632 610 632 0.96 10 11 3.3e-05 0.024 18.1 0.7 1 23 640 662 640 662 0.96 11 11 6.5e-06 0.0048 20.3 0.5 1 23 668 690 668 690 0.97
Sequence Information
- Coding Sequence
- ATGGCTAGCCCACTCGAGCTGACGCTCGCCTCTTACCATCAGCTACCCGTGGCTGGCCAAGAACTGAAGGCGCTCATACAAAATACTTTGCCACGGCGCCAATCTGACAGTTACCCTCCTACAGCCAAAcccgtccccccccccaaaaaaaagcaGGAGACATCCCCCCGGGCACGCGTCTTCAACGCTACAGGAGGTCGCTCGACTCCTCTCAGCGCGAAATTGACGTTTTCGGGACCCCAACACGGGGACCGGCGCGTGCTGCTGACTGGTGCCCTCGCTTATGCGACGCGAGGTTGCACCCATAACCCTGCTGGCACTTCTACCGAGACACCATCAGCCGCGCCCAACCGCTGCTATCTGTCGGCAGCCGAGTACATCACTCCGGACGATCCGTCTGGGCAAGAGGGCTTGTGGCGccttggcggcggcagcggcgcgggcgcgaacGACGTGGAGCGGACGGCTTCCCCCGCCGCGGtgccggcgccggcggtggcggaggacCCCGAGAAGCCGTTCAGCTGCGCGACGTGCGGCGCTGCGTTTCGCCACCGCTCCAACATGCTGCGCCACCAGCTGACGCACGGCGCGCAGAAGCCCTTCGGCTGCGACCTGTGCGGCAAGCGATTCACGCAGTCGGGCAACCTCAAGGTACAACGTCCATCGCGCACGCCGATCCCTAGCGAAGGAAAAGAAGGGGGCTTGGGCTCATCCCCGCCATCTTTCACGAATCTTCGTTTCCCGGTTTTCCATCTTCCTCGCCGCATTTTCCCTCCACGATACTCCCTGCCGCCCGTCCCTGCCACCACATTTAACTTCTTTTCCACATCCCCGCCGTCTCCCCGTTCACGACTTTCCTCGTCCCCACTGCTCCTCTCTGTGACTGCTGGCACCCTTTGCcggctccctccccgccccaaccctTCTCCAAATCTTCATCCCATGGCCCATCTCCGCCTACCAGTCTCCAACGTTTctctcttctccgccccgcctctccatcCACTGCCTGTCGCCTgggggtgggtgaTCGCGCTCGGTGGGAATTCCCGCCATCAGAGCAGACGCGCGTGCGCGCCACCGCTACAGAAGAAAGTTCGAAATAGCAGCCTTCACACTAGACGCGCCACTGAACCGGTTTTTGCCCGCTGCCTGTCTTTCGGCCGCCTGAGCCCACAGTGGTgggctctgccgcttctcggtggcgccaccgagtggctccgtgtgaaggctcTCTTACGTCATGCGTCGCGCGCGCTGCGTTTCCCGCCGCAGACGCACCTGCTGTCGCACTCGGGCCAGCGGCCGCACGCGTGCGCCGAGTGCGGCGCGGCGTTCACGCGCGCGTCGGCGCTGCGCGAGCACCTGCGCGTGCACGCGGCGGACGAGCGCCTGTCGTGCGGCGACTGCGGCCGCGCCTTCACGCGCCTGGCCACGCTGCGcgaccaccgccgcgccgcgcacacgCAGGACACGCCCTTCGCCTGCGCGCTGTGCGGCCGGCGCTacccgcacgccgccgccctcgccgagcacgcgcgcgccgcgcaccCGCCGCAAGATGGGCCGCGCTTCGTGTGCGAGCACTGCGGCAAGGGCTTCGCGCGCGCCAGCAAGCTGTCGGCGCACCGGcccgtgcacacgggcgagcgaCCCTTCGCCTGCGGCGTGTGCGGCGCCACCTTCGGAAACTCCACGCTCATGGCGCGccaccagcgcgtgcacacgggcgagaagccgTACGCGTGCGTCGAGTGCGGGCGCGCGTTCGCGCACTGGAGCTCGCTCAACAACCACCGGCGCAcgcacacgggcgagcggccgtTCGCGTGCGGCGCGTGCGGCAAGCGGTTCGCGCAGCGCGTCAACCTGCGCACGCACGAGCGGTCGCACGCGCCGCCGTCGgagcgcgcgcacgcgtgtgCCGAGTGCGGCAAGCGCTTCGCCCTGGCGGCGCACCTGCGCGTGCACGCGCGCCGccacacgggcgagcggccgtTCGCGTGCGCGCGCTGCGGCGCCGCCTTCACGCAGGCTGGCCACCTGCGCAAGCACGAACGCACGCACTTGCGCGATGACGCGGACGACGGCCAGCGCCAagggcctccgccgcgccgccgcaaaCGCCCTGCGGCGCCccgcgaggaggaggaggacgacgacgacgaagacgacgaggACGACGTCACGGACGACGAcaacgaggaggaagaggaggtggacgGCACAGACGATGACGACGTCGgcgaaggagaggaagaggagcagAAGGCGGCGGTGGACCCGCTAGCGGGCTCCGGGGAATCCCCGAAGCGCTCGCCCGCCCCTGCTCTCGCTCCAGCTCCTACGGTTGCTTTGCCCGTCGGCGCCGGCCTGCCCTAA
- Protein Sequence
- MASPLELTLASYHQLPVAGQELKALIQNTLPRRQSDSYPPTAKPVPPPKKKQETSPRARVFNATGGRSTPLSAKLTFSGPQHGDRRVLLTGALAYATRGCTHNPAGTSTETPSAAPNRCYLSAAEYITPDDPSGQEGLWRLGGGSGAGANDVERTASPAAVPAPAVAEDPEKPFSCATCGAAFRHRSNMLRHQLTHGAQKPFGCDLCGKRFTQSGNLKVQRPSRTPIPSEGKEGGLGSSPPSFTNLRFPVFHLPRRIFPPRYSLPPVPATTFNFFSTSPPSPRSRLSSSPLLLSVTAGTLCRLPPRPNPSPNLHPMAHLRLPVSNVSLFSAPPLHPLPVAWGWVIALGGNSRHQSRRACAPPLQKKVRNSSLHTRRATEPVFARCLSFGRLSPQWWALPLLGGATEWLRVKALLRHASRALRFPPQTHLLSHSGQRPHACAECGAAFTRASALREHLRVHAADERLSCGDCGRAFTRLATLRDHRRAAHTQDTPFACALCGRRYPHAAALAEHARAAHPPQDGPRFVCEHCGKGFARASKLSAHRPVHTGERPFACGVCGATFGNSTLMARHQRVHTGEKPYACVECGRAFAHWSSLNNHRRTHTGERPFACGACGKRFAQRVNLRTHERSHAPPSERAHACAECGKRFALAAHLRVHARRHTGERPFACARCGAAFTQAGHLRKHERTHLRDDADDGQRQGPPPRRRKRPAAPREEEEDDDDEDDEDDVTDDDNEEEEEVDGTDDDDVGEGEEEEQKAAVDPLAGSGESPKRSPAPALAPAPTVALPVGAGLP*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -