Tluc014581.1
Basic Information
- Insect
- Teleiodes luculella
- Gene Symbol
- -
- Assembly
- GCA_948473455.1
- Location
- OX419587.1:10898972-10907816[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.021 1.5 10.0 0.2 3 23 170 190 169 190 0.97 2 10 5.8 4.2e+02 2.3 0.0 2 23 195 216 194 216 0.94 3 10 3.8 2.8e+02 2.8 0.7 1 8 222 229 222 230 0.91 4 10 0.00073 0.053 14.5 1.7 3 23 258 279 257 279 0.97 5 10 0.013 0.96 10.6 4.0 1 21 284 304 284 306 0.94 6 10 0.0034 0.24 12.5 0.8 1 23 312 335 312 335 0.96 7 10 0.44 32 5.8 3.9 3 23 360 384 358 384 0.85 8 10 7.2e-05 0.0051 17.7 0.3 1 23 389 411 389 411 0.99 9 10 4.1e-05 0.0029 18.5 0.8 2 23 418 439 417 439 0.98 10 10 3.4e-07 2.4e-05 25.0 1.6 1 23 445 467 445 467 0.98
Sequence Information
- Coding Sequence
- ATGGATATATTGTGCAGAGCTTGCTTAGCAATAGAAGAAGATATGATTTCTTTAGACGAAGCTTTTGTTAATGCATATAACCTCTTGACAAATTTAAATGTGACGATGCTGGATCATATGCCGCAATATGTGTGTCAGAGCTGTGTGCACTCTGTCTCATTCTTTGTGGAGTTCAGGGAGCGATGTATTGCTACGGAAACCTCTTTACAAGACATTTTACTCAAGAATGTTAAGCAAGAAGAAGACAAACCCTTGTCGGAACTCGAAAATGAAGCTACAGGAATTAAAGAGGAGGTAAAAGAAGAAGATCAAAACTTTATCAATTTTGATGGAGATCATTTTGATGATGATGAGTTAATTCTCTCTATAAAGAGTGATGAAAATGAAGGTAGCAAAAAAGTGAAGGGTGTTAGACCAAAGAAGTTGAGGCTGAGAAACAAAAAATCCAAATCCAGTAAGAAAGAGAAAGTGAAATGTATTAAGAAAGAGCCTGCAGAGAGTATGTTATGTGGACTATGCAACAAACAATCCACGGACTACACAGAATTATCCATACACATAGAAAGTCACAAAGATTTAAGTAGCTGTGGATTATGCTCCGCTGTCCTCAAATCCTGGCCGGCCATGGTCGGGCACCGCTTCACACATATACCACAAAAAGAGTACAGGTGTCATCTATGTAAGAAGGCCAAGTGGGCCGCGGCAGGAGCGATAAGCATGGAGTACCATTATATGAACAAGCACTATGATGGAGAGAAAACCAAGTTATTGTGTAAAATATGCAACAGAGGATATGACACGCCGAGAAAGCTTAGTAAACATATGCATTCTGTACATTCAAAGAAATGCTTCATTTGTGATTACTGTAAGAAAATATATAACAACAAGCAACGTTTAATGTCTCACATAAAGTGTCACAGCGAAAACAGAGGTTATGTCTGTGAGTTGTGCGGGTTTGCCAGCAAACACAGTGGTGGGTTAAAGGATCACAAAATAAGGAAGCATGCTCCTGACAAAGTGAAATGCGCGGCGTGCTTGCGATGGTTCGCGACCGCCGCCGACATGCAGCGACACGCGTGCTCCATCGTCGCTAAGATATGCCCCATATGCGGGATACACATGAAAAACTACAACCGGCACATGCAGCGTCACTCGGTGAAGCTATACCAGTGTCCGCGCTGCCCGGCCTCGTACCGCTCCAAGACCGGCCTCACCGGCCATCTCAACCGCCACGACGGCATCCGCCCGCAGAAGTGCCCTTACTGCCCGCTCAAGTTCTTCACTCAGTCCGTACTTATTAAGCACAAGAGGATACATACAGGCGAGAAACCTTACGTGTGCAAAGTGTGCAATAAAGGGTTTACGGGCAACCACAATTTGAAAGTACACATGAAGGTTCACGGAGAGTATCTCGTGGTCAAGAGAAGTGCTCCCGTCGACTCCTCGCGCTACCCCCTCCCTCCAGCCAACCCCTCAAGTATAACCTTAGAGTAA
- Protein Sequence
- MDILCRACLAIEEDMISLDEAFVNAYNLLTNLNVTMLDHMPQYVCQSCVHSVSFFVEFRERCIATETSLQDILLKNVKQEEDKPLSELENEATGIKEEVKEEDQNFINFDGDHFDDDELILSIKSDENEGSKKVKGVRPKKLRLRNKKSKSSKKEKVKCIKKEPAESMLCGLCNKQSTDYTELSIHIESHKDLSSCGLCSAVLKSWPAMVGHRFTHIPQKEYRCHLCKKAKWAAAGAISMEYHYMNKHYDGEKTKLLCKICNRGYDTPRKLSKHMHSVHSKKCFICDYCKKIYNNKQRLMSHIKCHSENRGYVCELCGFASKHSGGLKDHKIRKHAPDKVKCAACLRWFATAADMQRHACSIVAKICPICGIHMKNYNRHMQRHSVKLYQCPRCPASYRSKTGLTGHLNRHDGIRPQKCPYCPLKFFTQSVLIKHKRIHTGEKPYVCKVCNKGFTGNHNLKVHMKVHGEYLVVKRSAPVDSSRYPLPPANPSSITLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -