Tluc019237.1
Basic Information
- Insect
- Teleiodes luculella
- Gene Symbol
- -
- Assembly
- GCA_948473455.1
- Location
- OX419611.1:4243137-4247883[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 2.3 1.7e+02 3.5 0.0 2 23 63 85 62 85 0.90 2 17 0.038 2.7 9.1 0.1 2 23 111 133 110 133 0.89 3 17 0.012 0.86 10.7 0.4 2 20 157 175 156 178 0.92 4 17 0.052 3.7 8.7 1.6 1 23 182 205 182 205 0.94 5 17 0.037 2.6 9.2 1.5 1 19 209 227 209 230 0.87 6 17 0.031 2.2 9.4 0.2 3 23 239 260 237 260 0.91 7 17 2.2 1.5e+02 3.6 0.3 1 7 267 273 267 275 0.91 8 17 5.6 4e+02 2.3 0.0 2 23 311 333 310 333 0.85 9 17 5.3 3.8e+02 2.4 0.3 2 12 359 369 358 381 0.84 10 17 0.017 1.2 10.3 1.8 2 23 405 426 404 426 0.97 11 17 0.034 2.5 9.3 2.1 1 23 430 453 430 453 0.97 12 17 0.47 34 5.7 0.1 2 21 458 477 457 478 0.92 13 17 1.2 83 4.5 0.7 1 21 485 505 482 508 0.83 14 17 0.017 1.2 10.2 2.7 1 23 515 538 515 538 0.96 15 17 3.8 2.7e+02 2.9 4.2 1 23 543 565 543 565 0.94 16 17 0.00036 0.026 15.5 0.6 1 20 571 590 571 593 0.94 17 17 5.1e-07 3.6e-05 24.5 2.2 1 23 599 621 599 622 0.96
Sequence Information
- Coding Sequence
- ATGGTCACGGCAGAAGTGAACAAAAGAACCAGTGAAGAATGTTCTACAAACATTGTTTCTCCCATTAAACTAGTACGTGGAACTGAGAAGAAGCTCCCGTCGCGCCGACAAAGAATGAAGACAGTTGAAATATTGCTGAAATTCTCTACAGCGTATCCCTTTAGATTAAACGGGGTTAATAAAATCGTTTGCGCATATTGTCTGGACGAATTCACAGAACCAGACGAATTTAGGGGGCATATGGATGAGGAGCATAAGAATGCTGAAGTTAGCAACGCGGTGAAATATACTCCGGGCGCTCAATATGTCAAAGTTGATTGTACTAACCTTCGCTGTCGCATCTGCTCTGAACCATTTAGAACTGTGGACGAAGTTGCGAAACATTTATTCGACGAACACGGTTTCACAACAATCGATTTGGAAAATGAAATCGCGATTCATCCTCACAAATTGATTGCGGACGATTGGAGGTGTTTCGTTTGCAACGAGAAATTTCCGTCAATATTCAATCTGTGGAGACACACTCCATCCCACTTCTCTAAACACATGTGTGAGATCTGTGGCAGGTATTACTCCTTGCGCCGCTCCTTGAATTTTCACAGAAGGTACGCGCACGCGGAGAATTTTACATGTAGAAAATGCGGTCAAGAGTTTAGGACTAAAGAAGAAAAGGCTTATCATTCAAAATACACTGAAAGTTGTAAACCATTTGGTTGCGCCTTGTGCGGTGAAAGATTCTCTACCAACGACTTAAAAGAAGATCACTTGGAAGAGAAACACGGCAAAGTTAAAACTGCTTATCGATGCCCAGATTGCGGTGCGAATAACGGAAGAAATGAACAAACTCGCCGAAGCAAACTGAGGAACGCTGAAGTATTGTTGCAAAACACTACACTATACCCCTTTAGAGTGAAAGGGGTTAACATAATTGTGTGTGCGACATGTTTAGATGAGTTTGGCAACCCTGATGATTTCCGACAACATTACGATGAAGAGCATAGTGATGTCAAAGTCTTCAGTGCTCTTAGCCACTCCAGAAGCACTGGACATCTTAAAGTTGACTGCACAAATCTTAGTTGTCGCCTATGTGGCACCTCTTGTTCCACAATCGAAGAAATAGCGTTCCACCTTTACGAGGTACATGAGTTTGAAAGTTTGGATTTAAACGAGGATCTCGGCTTTCATCCGTATAAGTTGGAAGCGGATAACTGGCAGTGTTTCCTATGCGAGAGGAAATTCCCAATACTCTACGCTTTGTGTCGGCATACAACGACGCATTTCTCTAAGCATACCTGTGAAATTTGTGCCAAGACTTATTTGACCCAAAACGCTTTGAATTACCACAAAAAGACATTACATGTTAAAAAGCAGGTTTGCAGAAAATGTTGGCAAGAATTCGATACTAAAGAAGAAAGGGCGGAACATTTAAAGGTTTCGGACCGCTGTCGTCCATTTATGTGCATTACTTGCGGCTTAAGATTCTCCTCTTGGGAGCTTAAGGACAAACACAGAGTGGAAGTCCACAGTGGTACCCCAAGGGTGTATGAATGTCCGGAATGCGATGAAATTTTAAGCTCGCGCAAATGCTTCTACACCCATTACAAGTTAAAACACACAGATGATTGTTTTATCTGCACTTGTTGTGGGATGAAGTTCGTGAGTAAACATCGTTTCGATGAGCACGTTAAAGGACATACAGGTGAAAAGGGGTTTACTTGTGAAGTGTGTCTCAAACAGTTCTCTATGAAGAAGAATCTGATTCAACACATGTGGATTCACAGTGAGAACAAGAGATTCACTTGTGTTGTTTGCGGGAAACAGTTTGCGCAGAAGGTTAGCTTAAAGACCCATATGAGGTCGCACCATACTGACGTGGACCTTTTGGATCAATGTTGA
- Protein Sequence
- MVTAEVNKRTSEECSTNIVSPIKLVRGTEKKLPSRRQRMKTVEILLKFSTAYPFRLNGVNKIVCAYCLDEFTEPDEFRGHMDEEHKNAEVSNAVKYTPGAQYVKVDCTNLRCRICSEPFRTVDEVAKHLFDEHGFTTIDLENEIAIHPHKLIADDWRCFVCNEKFPSIFNLWRHTPSHFSKHMCEICGRYYSLRRSLNFHRRYAHAENFTCRKCGQEFRTKEEKAYHSKYTESCKPFGCALCGERFSTNDLKEDHLEEKHGKVKTAYRCPDCGANNGRNEQTRRSKLRNAEVLLQNTTLYPFRVKGVNIIVCATCLDEFGNPDDFRQHYDEEHSDVKVFSALSHSRSTGHLKVDCTNLSCRLCGTSCSTIEEIAFHLYEVHEFESLDLNEDLGFHPYKLEADNWQCFLCERKFPILYALCRHTTTHFSKHTCEICAKTYLTQNALNYHKKTLHVKKQVCRKCWQEFDTKEERAEHLKVSDRCRPFMCITCGLRFSSWELKDKHRVEVHSGTPRVYECPECDEILSSRKCFYTHYKLKHTDDCFICTCCGMKFVSKHRFDEHVKGHTGEKGFTCEVCLKQFSMKKNLIQHMWIHSENKRFTCVVCGKQFAQKVSLKTHMRSHHTDVDLLDQC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -