Tluc015640.1
Basic Information
- Insect
- Teleiodes luculella
- Gene Symbol
- -
- Assembly
- GCA_948473455.1
- Location
- OX419607.1:1164507-1170285[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.11 8.2 7.6 0.1 2 23 200 221 199 221 0.96 2 12 5.9e-06 0.00042 21.1 3.2 1 23 227 249 227 249 0.98 3 12 3.2 2.3e+02 3.1 3.8 1 23 263 285 263 285 0.94 4 12 0.00013 0.0093 16.9 0.5 1 23 509 531 509 531 0.95 5 12 0.0013 0.094 13.8 3.0 2 23 537 559 536 559 0.96 6 12 0.74 53 5.1 4.1 2 21 568 587 567 589 0.92 7 12 0.00047 0.033 15.2 6.6 3 23 594 614 592 614 0.97 8 12 0.23 17 6.7 1.9 3 23 628 649 626 649 0.95 9 12 4.3e-05 0.0031 18.4 2.4 1 23 655 677 655 677 0.98 10 12 0.22 15 6.8 4.5 2 23 684 705 683 705 0.98 11 12 0.0069 0.5 11.5 1.6 1 23 711 734 711 734 0.97 12 12 0.00078 0.056 14.5 1.8 3 23 740 761 738 761 0.93
Sequence Information
- Coding Sequence
- ATGGAAACGCTACCAACGAAAATCCCGGTCAACCAGTGTGTTATTCCTGCAAGAGGAGCGAAAAAGAAGCCCAACGTGATTGTGTTCAAAAGCTATGTTTTGTCAACTAAAACTGCCGTTAGACTACTGCTTAACGGCAAATTGAAAAGAAAAGTGTGTCGATATTGCCTAAGGATCACAGGACCGCTATCGGAGTTGGATCAAATAATGCAGATAGCTAGTAAAACAGCTATGTATAAAGTAACTATTCGAGATATAGTGGCCAGTGTTCACCCATTCAAGGTTACCGAAGATCCAAATTTACCAAGCAAGATCTGCGAAAAGTGCCTCAACAAAGCAATCAGATCATATCTCTTTGCTCAACAGTGTGAGCAGTCTGAGCGCGCTCTTAGAAACTGCTTTAAAGACATGTATGAAAAACTAGATAAACTTGATCCATTAGAAAGAACTAAAAAACGAGGCAGACAAAAACTAAATCCTAACTACAATGTCTTATACACTGAACATCGCAATGTCATTGATTACGCTGATCCTATAAGAAACTTAATAAATGTTAGTGCGGTGCCTCTCACTAAAGAACCAATGATGGGAGATCTCGAGTGCAAGAAGTGTTGGCAAATATTACCAAATGTTGAATCACTTGCAAACCATGAAAAAATGCATCCCAAATCAATGTGGTACAACTGTCGCATTTGTGGCAAGGCATTTGCAAAGAAATTTCATATGAAACGCCACCTCCGTATTCATGCCAAAGGAAAAGTTCCAGATTTAGTTCATGATGAAAATTTTGTATGCAAACAATGCGGGCATGCTACTGAAAACCATGATTTACATCTTCAGCATATTGAAAAGCATAAATTTAAAACAGTACTTGAGCATTTGGTTGAGAGGAAAATGGATAAACTGTGTTCGGTTTGCTTTAACAGTGACAGCAAAATGATAGAAATGAATAAGATGATATGTCTGCATGGAGGTTATCCAGAGTTGACGGGTGATAGAACACTTTACAGCATTCTTGGATCTACTGTACCAGAGATGAATATCCTACACAATCATACTGGGTCAAAAATTTGCGAAAAATGCTTAGATCACGCGATTATATCCTATATTTTCATCAACAAAACACATTACATAAGAAATCGCTTAGATAAATGTATAACCAACATGATAGAAAACTTGAAAGATGCAAAAACTGACAGTAAAATATTTATAGAAATTGCACAAAATGGTATAATGCCAGTAACAGACACTTATGATGAAAATTTGTTACTAGATGATGATGAAATAGATGAAACGAAATTGAAAGTTGATGTCTTAGAAGATGAGTATAGATTAAAGTCTGACGAAGAAAGTGACGATGAAAAAGACATAAAAGAAAATGAGAAGGATGGTAATATAAAAAAGACTATTGCCAACCAAAGAGAAACAGATAAATTAGTTAATGGGTACAAAGTATCCTCAGACATAGGAGAATTTTTAACATTTAAAAAGAAAGGGAACAAATCTAAAAAACCGAAGTTGAAGTACCTCTGTCCAGTTTGTGACAAGAAATTCATTTCTGATTATTTCTTAAACAAGCACATTGTGAAACACGTGAACCGAAAAGTTGAATGTAAATATTGCAAAAACATCTTTAAATCTAAATTCTGTTTGAAAGAGCATATCAAAATGGCTCACGTTTTAAAGCTTCAAAACTCTAGCACCTGTGATTTGTGCAGCAGATCATTCAAAAGTGAGAAGGAAAAGGTGCAACACCAAAAATGTCACAGACTCAAAAATTGCGATCTGTGCGGTAAAACTTTTAGACATCAAAAACATTTCGATAATCACTTGCAACGCCACGCATTGAAGTTATCAACTCAAAACCGTAAGAAACAAAACTGTAGTTTCTGCGAAAAGGAATGTTCAAGCGACAATGAACTCTCAATTCATGTTAATAAAACTCATTTGCAAATTAAACCGTACAGCTGTGACATGTGTGAAAAACAATTTTACACAGAACAAAATTTAAGAAAGCATAAGAAAATACACTCTATGTTCTTGATACAAAAGTGCGAGTTTTGTTCGAAGCTTTTCAAATGCCGCAGAAGTTTAGTAGTGCATATTAGGAAACATATGGGAATTAAACCATTTAATTGCTCGTTATGTACGGAATCATTTTATTCAGAAAATAAAGCGAAGCAACATATGAAAAAATGGCACGGAGGTAGCTCCTGTTGTAAACTGTGTAAGAAAGTTTTTGTTAGTAAAAAAGGCCTAAAAGATCATGTCAATGGTGCACATAGTATATTCTAG
- Protein Sequence
- METLPTKIPVNQCVIPARGAKKKPNVIVFKSYVLSTKTAVRLLLNGKLKRKVCRYCLRITGPLSELDQIMQIASKTAMYKVTIRDIVASVHPFKVTEDPNLPSKICEKCLNKAIRSYLFAQQCEQSERALRNCFKDMYEKLDKLDPLERTKKRGRQKLNPNYNVLYTEHRNVIDYADPIRNLINVSAVPLTKEPMMGDLECKKCWQILPNVESLANHEKMHPKSMWYNCRICGKAFAKKFHMKRHLRIHAKGKVPDLVHDENFVCKQCGHATENHDLHLQHIEKHKFKTVLEHLVERKMDKLCSVCFNSDSKMIEMNKMICLHGGYPELTGDRTLYSILGSTVPEMNILHNHTGSKICEKCLDHAIISYIFINKTHYIRNRLDKCITNMIENLKDAKTDSKIFIEIAQNGIMPVTDTYDENLLLDDDEIDETKLKVDVLEDEYRLKSDEESDDEKDIKENEKDGNIKKTIANQRETDKLVNGYKVSSDIGEFLTFKKKGNKSKKPKLKYLCPVCDKKFISDYFLNKHIVKHVNRKVECKYCKNIFKSKFCLKEHIKMAHVLKLQNSSTCDLCSRSFKSEKEKVQHQKCHRLKNCDLCGKTFRHQKHFDNHLQRHALKLSTQNRKKQNCSFCEKECSSDNELSIHVNKTHLQIKPYSCDMCEKQFYTEQNLRKHKKIHSMFLIQKCEFCSKLFKCRRSLVVHIRKHMGIKPFNCSLCTESFYSENKAKQHMKKWHGGSSCCKLCKKVFVSKKGLKDHVNGAHSIF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -