Tluc023918.1
Basic Information
- Insect
- Teleiodes luculella
- Gene Symbol
- -
- Assembly
- GCA_948473455.1
- Location
- OX419608.1:2088255-2092360[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.88 64 4.8 1.0 3 19 313 329 311 334 0.92 2 13 0.24 18 6.6 0.3 3 23 372 391 371 391 0.95 3 13 0.009 0.64 11.1 0.5 2 23 432 454 431 454 0.96 4 13 0.014 1 10.5 0.4 2 23 462 483 461 483 0.97 5 13 0.0014 0.099 13.7 2.5 1 22 489 510 489 510 0.94 6 13 0.98 70 4.7 1.0 1 19 549 567 549 572 0.89 7 13 6.6 4.8e+02 2.1 0.6 2 23 609 629 609 629 0.86 8 13 0.0012 0.087 13.8 1.6 2 23 674 696 673 696 0.94 9 13 9e-06 0.00065 20.6 0.5 1 23 703 725 703 725 0.97 10 13 0.0055 0.4 11.8 8.2 1 23 731 753 731 753 0.96 11 13 5.5e-05 0.0039 18.1 1.6 1 23 759 781 759 781 0.96 12 13 0.00066 0.047 14.7 1.0 1 23 787 809 787 809 0.97 13 13 5.9e-07 4.2e-05 24.3 1.9 1 23 815 838 815 838 0.97
Sequence Information
- Coding Sequence
- ATGGAAAAATTATATTGTAGATTCTGTGCGGAAATGAAAACCCCAGAGGGGCTGTTGAATTTGGATCGCGACTTCGGAAAATGTAAGGAAATCGAAATAAAAATATTGTTCGTGAATGCCATATACATCGATGTGCTGGAAAGCAGTGATATCCTTCCAAAGACGGTTTGTTTCACGTGTTACGACTCTTTAAACGAAGCATATAAGTTTCTTGATAAGTTGAGAAAGTCTCAAGAGAAATTTAAACTCCTGACAAGGTTTCTTCCAGAAGATGAAACCAATTTTAATTTCAATGACGATAGGGCCGCGTTGGAAGAATTCTTTAATAAAACTAATGATAGGCACGAAATTAAAGAGGAAACCGACACAGGAGAAACTCATGATGGTGGTTTAGAAATAGATGTAGTCGAGAAGGTTGTATCTCATGAATACTTCAATGAACCAATTGAAACACATGTAGTAAAAGAAGAACACGATTCTAATACTGAAGAACTACCTATTGAACATAATCGTAATCTTGACAATGACTCGGTAGACCTTGAAAAAGATGATATTAATGATCATGATGTTGAACCATCCTCTGATATTAATGAAGAAGATATAGCAAATGAATACCTTTATAATAACATACCAGTATATAAAAAAAAATTCAATATTCAAGAAAAGCTAAATACTATCCAGAAGGATGTCCCTACTAACATAATGGTCAGAGAGTCAACTTCAGAGCAGAAATCTCTTGATACTGATATCTCATCTGATATTGATGAAGAAACGACAGCAGATGAATTTCTTTATAATAATGTACCAGTATATAAAGAAATTACAGATATTCAGGAACTACCGAATACTATCCAAACTGAAGATGTCCCTACTAAAGTTACTTTAGAAACGGCTGTCAAACAGAAAATCAAATCTTGGAAAGAGTTCATTTGGGCCTGTGCATACTGTGACTCAGAGTTTACCAATATAGACTCTTTCAGATCACACTGTATTGAGAAACATTTTAAATGTGCTATGTTTACATGTGTCGATTGTGAAAAAACTATGGAAATAGATAATTTCGATCTATTTGCAAAACATGTACAGAGACACAATAAAGAACTCAGAAACCTTTGCCACTACTGCGATAAAGCTGTAGAGTCCGACTTATTGGTAACACATGTGAAAGCACACTCTAAATCCCATTTAGTCTGCCCCATGTGCGGGGTATTGCAGCCTAATGAAGAAACCTATCGGCGACACGTGGCTGAAAACAGTAATAGAGAAAATCCCCTTCCCATCAGAGAAGGGGTAACATGCGATATTTGCAATAAAATATTAAAAGACAAGAATATATTGAGAAAGCATAAACGAATTGTACATAAACATGAAACTAACAGTAATAAATGTGGCCAGTGCGGACGATTTTTCCTCGAAAAAAACAAGTTGGAAATTCACATGTTGGTTCATGAGAAAGACCGTCCTTATTTTTGTAAAATTTGCTTTAAATCTTATTTTTATCAATACTCTTTGACAAAGCATTTAGAAACGTATCCTGTGCAATCTCTTTCCACTGAAGATTTTTTAATGAGTGAGGGAGACAGAAATATACATTCTGAAGTTAGTGAGGTAGACAAAGAGACCAATTCGTGGAAAGATTTTGAATTTGTCTGCGCTCTCTGTGACATGGGCTTTACTGAAATTGATAAGTTCCGGTCTCACTGCAAAGAGGCACACAAAAAATGTGCTGCTTTCTCTTGTGTTGATTGTGAGAAAACTAAGACAATTGATGGTTTTGATACCTTTATAAAGCATGTTCAGATGCACCGGAAAGGACTAAGAAACCGTTGTCACTTCTGTGATGAGGTGGTGGAAAATGGTTCGTGGTCGTCTCACCTAAACTTGCATTCTAAAAACCTTTACGGTTGTCCGTCGTGCGGAGAGTTACTACCAAACATAAAAATAGCTGAGAAACATGTCGCAGAATATACAGAAATCCATCAAATGTCAAGAAAAAAACTAGTCACTAAAGAAGATCTAACTTGCCAAATTTGTAAAAAAGAATTCAGTAATAAAAATTCTGTACGCGAGCACAAAAACAATATGCATACAAATAATATTCCAAAATATTTTTGCGACCGTTGCGGCAAAGGTTTCAAGCAGAAAGTCTCGTTGGAAACGCATATTATGGGTCACGATAAAATTCGTCCGCACGTGTGTAAAATTTGCAAGAAATCTTTTAAGTTAGCATGCCATTTAAGACACCATCTAGTGATACATAATAGTTTAAAACCATTTTGTTGTGAAATATGCGGACGCAGCTTTAGGCAAATAAGACAATTGGAATCCCATAAAATTATCCACACAGATTCTCTGCCGTTCCCGTGTAAATTTTGCGATAAAGCGTTTCGTTTTAAGCAGGTTTTGGTTAACCATGAACGGTTGCATACTGGTGATAAACCGTACAGTTGCGAAGACTGTGACAAGACATTCGCAAATTGGTCGAACTATAACAAACATAGTAAGAGAAAGCATAAAAAAAACTTGGCAAAGAAAAAGATCACAGCGGAAGGAGTTTTTCCTATCAACCCCAGGACTGGGCAGGTCATCCGAGTGGATTCAAAAGGTATAGAAGAGTGGAAGACGAAAGTCATGAAACCGATTAAAAGAGGCAAGAAGACTAATGCATAA
- Protein Sequence
- MEKLYCRFCAEMKTPEGLLNLDRDFGKCKEIEIKILFVNAIYIDVLESSDILPKTVCFTCYDSLNEAYKFLDKLRKSQEKFKLLTRFLPEDETNFNFNDDRAALEEFFNKTNDRHEIKEETDTGETHDGGLEIDVVEKVVSHEYFNEPIETHVVKEEHDSNTEELPIEHNRNLDNDSVDLEKDDINDHDVEPSSDINEEDIANEYLYNNIPVYKKKFNIQEKLNTIQKDVPTNIMVRESTSEQKSLDTDISSDIDEETTADEFLYNNVPVYKEITDIQELPNTIQTEDVPTKVTLETAVKQKIKSWKEFIWACAYCDSEFTNIDSFRSHCIEKHFKCAMFTCVDCEKTMEIDNFDLFAKHVQRHNKELRNLCHYCDKAVESDLLVTHVKAHSKSHLVCPMCGVLQPNEETYRRHVAENSNRENPLPIREGVTCDICNKILKDKNILRKHKRIVHKHETNSNKCGQCGRFFLEKNKLEIHMLVHEKDRPYFCKICFKSYFYQYSLTKHLETYPVQSLSTEDFLMSEGDRNIHSEVSEVDKETNSWKDFEFVCALCDMGFTEIDKFRSHCKEAHKKCAAFSCVDCEKTKTIDGFDTFIKHVQMHRKGLRNRCHFCDEVVENGSWSSHLNLHSKNLYGCPSCGELLPNIKIAEKHVAEYTEIHQMSRKKLVTKEDLTCQICKKEFSNKNSVREHKNNMHTNNIPKYFCDRCGKGFKQKVSLETHIMGHDKIRPHVCKICKKSFKLACHLRHHLVIHNSLKPFCCEICGRSFRQIRQLESHKIIHTDSLPFPCKFCDKAFRFKQVLVNHERLHTGDKPYSCEDCDKTFANWSNYNKHSKRKHKKNLAKKKITAEGVFPINPRTGQVIRVDSKGIEEWKTKVMKPIKRGKKTNA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -