Tluc019236.1
Basic Information
- Insect
- Teleiodes luculella
- Gene Symbol
- -
- Assembly
- GCA_948473455.1
- Location
- OX419611.1:4239586-4242133[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00072 0.052 14.6 1.2 3 23 51 72 50 72 0.98 2 12 0.72 51 5.1 0.1 2 23 97 119 96 119 0.90 3 12 0.00075 0.054 14.5 1.0 2 23 143 164 142 164 0.96 4 12 0.00035 0.025 15.6 1.4 1 21 168 188 168 189 0.96 5 12 0.35 25 6.1 0.8 1 23 230 253 230 253 0.93 6 12 5.4 3.9e+02 2.4 0.1 2 23 279 300 278 300 0.89 7 12 0.00099 0.071 14.1 0.6 2 23 323 344 322 344 0.95 8 12 0.0012 0.086 13.9 0.0 1 23 348 371 348 371 0.97 9 12 0.38 27 6.0 2.1 1 23 375 398 375 398 0.97 10 12 4.7 3.4e+02 2.6 0.2 3 23 405 428 403 428 0.80 11 12 0.00017 0.012 16.6 2.8 1 23 437 460 437 460 0.97 12 12 0.00013 0.009 17.0 2.6 1 23 470 493 470 493 0.96
Sequence Information
- Coding Sequence
- ATGAACCGGCGCAACTTGGATAGCCAAGGCCGTAATGAAAAGAAAAGAAAGGTTGTCCTTGTCTACCAGACCCCCCAAAGACGTAACGCTGAAATGATTCTTACTTTCTCAACGGCTTACCCGTTCAAAACGCGCTTCAGCCAAATTCTATGCGCTTACTGTCACGAGGAGTACAACCAGTTTGAATTATTACGTCAGCACATGAAAACTGAACACACTACATCCGATTTCAAAAACGTCTTCTACAGAACCAAAGATAATCTGGTTAAAATCGATATAACTGAATTGAAATGCAAAGTTTGTGGCCTTGACATACCCGATGTTAATACTCTAATGACACATTTCGCTAGGGATCATGGGAAACCAGTGAAACCGTACGCCAGATTCGGCGTGTTACCTTATAAGCAGAATTCGGACAGCCATTGGGTCTGCGTGTATTGTCACAAAGTTTTCACAGCATTTCTTAATTTTAACCGCCACATTGGAACGCACTTTATGGAGTACTCTTGTGACAAATGCGGAACGACTTTCGTATCAGACCATGCGCTAAAAGATCACCACAGACAAGTGAAATGTTTCCGTAGTGCGTACAAGCCTAGGAATGGTAAAGTTCTGAGGCCTAGGAGTAACGCAGAAATAGTTCTACAATGTTCCACAGCAATACCGTTTCGGACGTGGAAGAACAATTTCAGTTGCGTGTTCTGCAGGCTGCAAACTAGCGACCCTTGCGCGCTTAGAAATCACGTGGCGAATCTTCACGCGAACTACAACGTTCAGGCAGCGTTTTATAAGAAACTTGGAAAGGAATTTCTTAAGATTGACATCACAGGGCTTCAATGCAAAATTTGTTTAGCAACCATTGATAACTTTGAGAGTCTAACGCCACATTTGAAAGGTCACCAGCAACCGTTATCTGATGATCAGCTGGGTGTTTTACCCTTTAGGCTGAACGACGCATCGATTTGGAAGTGCACCATATGCCCGAACGAGTTCAAAGATTTCGTGTCGTTAAAAAAACATACGTCTGAGCATTTTCAAAACTACGTGTGTGATGCGTGCGGGGAGGGATTCATCACTGAATCTGCAATGATTGCTCACACCAAAGTCCCTCATGAAAACAAATACAATTGTAGCCGATGCATAGCAACATTCTCATCGCTAGACGAACGAAACCATCACGTCAAAACTCAACACACAAGCACTCCTTATTTATGCGTTTACTGCAAAGAGAAACCGCGTTTCGCGAACTGGGAGTTGAGAAAGAAGCATTTGATGGAGGTGCACAATTTTAAGACTGGCGCAGACAAATATGAATGTACGACTTGTCAGAAGACGTTTAAGACGCGGTCAGGAAAATACAACCACATGGCGAGGACGCATCGTATGAAGAGGGAGTCGGAGTTGAGTTATCCATGCCATTATTGCCCTAAAGCCTTTACCACTAAGCTGTTTTTAGATAATCACATTACTAAGAAACATTTTGATGTGTAA
- Protein Sequence
- MNRRNLDSQGRNEKKRKVVLVYQTPQRRNAEMILTFSTAYPFKTRFSQILCAYCHEEYNQFELLRQHMKTEHTTSDFKNVFYRTKDNLVKIDITELKCKVCGLDIPDVNTLMTHFARDHGKPVKPYARFGVLPYKQNSDSHWVCVYCHKVFTAFLNFNRHIGTHFMEYSCDKCGTTFVSDHALKDHHRQVKCFRSAYKPRNGKVLRPRSNAEIVLQCSTAIPFRTWKNNFSCVFCRLQTSDPCALRNHVANLHANYNVQAAFYKKLGKEFLKIDITGLQCKICLATIDNFESLTPHLKGHQQPLSDDQLGVLPFRLNDASIWKCTICPNEFKDFVSLKKHTSEHFQNYVCDACGEGFITESAMIAHTKVPHENKYNCSRCIATFSSLDERNHHVKTQHTSTPYLCVYCKEKPRFANWELRKKHLMEVHNFKTGADKYECTTCQKTFKTRSGKYNHMARTHRMKRESELSYPCHYCPKAFTTKLFLDNHITKKHFDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01337250; iTF_00151019; iTF_00178622;
- 90% Identity
- -
- 80% Identity
- -