Tluc025380.1
Basic Information
- Insect
- Teleiodes luculella
- Gene Symbol
- -
- Assembly
- GCA_948473455.1
- Location
- OX419609.1:2661103-2673250[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.045 3.3 8.9 0.8 1 23 319 341 319 341 0.98 2 11 0.012 0.85 10.7 0.3 3 23 350 370 349 370 0.96 3 11 0.71 51 5.1 0.1 1 23 374 397 374 397 0.93 4 11 0.0023 0.16 13.0 1.5 2 23 425 447 424 447 0.95 5 11 0.00011 0.0082 17.1 0.3 2 23 471 493 471 493 0.97 6 11 0.0028 0.2 12.7 0.3 2 23 500 522 499 522 0.93 7 11 0.00062 0.045 14.8 5.2 1 22 536 557 536 561 0.93 8 11 0.00013 0.0096 16.9 0.1 2 23 567 589 566 589 0.95 9 11 1.5e-05 0.0011 19.9 1.7 1 23 595 618 595 618 0.93 10 11 0.00075 0.054 14.5 3.4 3 23 629 649 627 649 0.96 11 11 0.0027 0.2 12.7 1.2 1 23 655 678 655 678 0.95
Sequence Information
- Coding Sequence
- ATGCAGGATACTAAGCCTCCATTGAATTTGATACGGTATATCAAGCGTACAGTGTGCGCGATATGCCTGAGTCACGGTAGGCGGTTCGTGCGGCACCCCGTATTGCTGGACCAGGTCATGTTCCACATTCCGCAGTTCGTTAAGCTAAATCAAGCAGATAATATATGTTGGGAATGCCACACAAAACTGAAAAAAGCTCTAGAATTCCACATCCAGGCCAAGAATGCTTACACTGCAATGAACAACGCTATGCTTGGAGTAATGGGGTCAAGTATTTCACTACGATCATTGTCAACTTTAAAAATAGAAAATCAAGTAGTCCATATAAATATTGAACCTTGTGGAACATCTTTAGACACTGTAGAAAACCAAGTGAATTCTGAAATATGTAACAATGATGATGCTTGGGATCCATTAGTTACTAAAACAGAAAAACCATTTGTCAAGATTGAACCAGGAGCTGATGAGGAAACACCGGTTAATTCTAGCAATAATGAAACTCAAATAGATTTAAACGAAGTTATTAATATGAAAATCAATAAAATATATACTGAAAATGCTTCTACTTCATATAAAGGGTTAGAGAACTCTTCATTATTACAATCAGCTATTATGGGCACTAATAGATCGCTGCCAAGTGATACAGAAATCAAAATAGAAATTTCACCTGAAAACACAATATATAAGTCAGAAACAACTGACGGAGATCAAACTGAAACTGTCTACAGCAATGATTCTGATGACAGTTCATTGGAAACAGATACTATTGCATATGTTGATGGTAATAAACACAGTTCAAGTAAATCGACACCTGTAAGAAAAGCAACAGCTACAACACAAAATTTAAAAATTTACGATATTGATGATGAAATAATATCAAAGAGAATAACTGAAAATGAATTGCATGCAGTGCGGGAAATGGACCGCAAAGACTCTGTATATTTGAATGCGAATTATAGATGTGACAAATGTATTTTTGGATTTAAAGAGGAGAGTTCCTACACTGCTCATTTAGAAAAGCATAATGAATCGTTCGGGTCAGAAATGTGCAGTATTTGTGAATTACGATTTAGAAGTACCGAAGCACTGGACAGTCATAGAATTTCGCATTTCGTAGCATACTTGTGTCCACTATGCGAGTACCGCAGTGCATATCCGACATCAGTGGAGGAACATTTCAGACTAAATCACCCGAAGACTTCGCCGGCCTCCCCTAAATGCGACATTTGCTCCTTTGTTGCCTGGAGCGTGGTGAACAGACGCAAAGGTTGCGAGTGTCCGGTTTGCGGTATAAAACTGCGGTCACAGTACCGACTCAACTCGCACCTCAAATACAGCCATATGGACCAACTCAAGAAGAACCCACAATTGCTCCCGATGGGTATACGCCTAGGTCGCTATAAGATACCAACATGTCAGTACTGCGGCAAGACATTCGAGTTCCCTGCCATTCTCAAGAACCACATACGATCAATTCACGAAAAGCGGCCAAAGATCGAATGCCCGGTGTGCAAAAAAAAGTACTCGAACGCGAACACTGTGAAATACCACCTGTTAGAGTACCACGTGCCGTCAGTGGAGACGGAAGACGGGCCGAGAGAGAGACACTACTGCAAACAATGCGACAGGTTCTTCAAAAACCGGACGAACTATAACACGCACTTGAAGACTACAAGGATACACGCCACGAGCTTTGTGGAGTGCAACGAGTGTGGCAGACGGTTTACGGAGAAGACCTCTCTGGCGGGGCACATCGCGCGCGTGCACCTGCGCCTGCGCACGCACGCCTGCACAGACTGCGGCAAGTCGTACTACAAGAAGGCGCTGTTAAGACGGCACATTTTATTGAAGCATCGCGCCGAGGCGTCGCCGAAGAGACACTTGTGCAGCCAGTGTGGAAAGAAATTTTCTTATATGCGAACATTGTCGTCGCACCTGTTAACGCACACCGGCGTCCGGCCGTTCCACTGTCCGTACTGCGACTACAAGGCGGCACAAAAAAGCGCGCTCGTTACTCACGCCAAGTACAAACACAAGGACCAACCGCCGCTCAAGTATCAGGACATCACGCCACACAATCACACTGAAACATGA
- Protein Sequence
- MQDTKPPLNLIRYIKRTVCAICLSHGRRFVRHPVLLDQVMFHIPQFVKLNQADNICWECHTKLKKALEFHIQAKNAYTAMNNAMLGVMGSSISLRSLSTLKIENQVVHINIEPCGTSLDTVENQVNSEICNNDDAWDPLVTKTEKPFVKIEPGADEETPVNSSNNETQIDLNEVINMKINKIYTENASTSYKGLENSSLLQSAIMGTNRSLPSDTEIKIEISPENTIYKSETTDGDQTETVYSNDSDDSSLETDTIAYVDGNKHSSSKSTPVRKATATTQNLKIYDIDDEIISKRITENELHAVREMDRKDSVYLNANYRCDKCIFGFKEESSYTAHLEKHNESFGSEMCSICELRFRSTEALDSHRISHFVAYLCPLCEYRSAYPTSVEEHFRLNHPKTSPASPKCDICSFVAWSVVNRRKGCECPVCGIKLRSQYRLNSHLKYSHMDQLKKNPQLLPMGIRLGRYKIPTCQYCGKTFEFPAILKNHIRSIHEKRPKIECPVCKKKYSNANTVKYHLLEYHVPSVETEDGPRERHYCKQCDRFFKNRTNYNTHLKTTRIHATSFVECNECGRRFTEKTSLAGHIARVHLRLRTHACTDCGKSYYKKALLRRHILLKHRAEASPKRHLCSQCGKKFSYMRTLSSHLLTHTGVRPFHCPYCDYKAAQKSALVTHAKYKHKDQPPLKYQDITPHNHTET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -