Tluc019168.1
Basic Information
- Insect
- Teleiodes luculella
- Gene Symbol
- -
- Assembly
- GCA_948473455.1
- Location
- OX419611.1:3310833-3317511[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 6.1 4.4e+02 2.2 10.3 1 23 22 45 22 45 0.90 2 12 1.8 1.3e+02 3.9 2.1 1 23 64 87 64 87 0.92 3 12 3 2.1e+02 3.2 0.1 2 23 94 115 94 115 0.80 4 12 6.4e-06 0.00046 21.0 0.4 2 23 121 143 121 143 0.97 5 12 0.00064 0.046 14.7 5.8 1 23 149 171 149 171 0.98 6 12 4.2e-06 0.0003 21.6 0.8 2 23 178 199 177 199 0.97 7 12 0.00075 0.054 14.5 2.8 1 23 223 246 223 246 0.96 8 12 5 3.6e+02 2.5 0.1 1 20 254 272 254 276 0.71 9 12 6.5e-05 0.0047 17.8 4.5 2 23 282 304 282 304 0.98 10 12 0.0044 0.32 12.1 0.2 1 23 310 332 310 332 0.95 11 12 4.6e-05 0.0033 18.3 2.5 1 23 338 360 338 360 0.97 12 12 5e-06 0.00036 21.4 0.9 2 23 365 387 364 387 0.95
Sequence Information
- Coding Sequence
- ATGGATCCTGAGGTAGTAGAAGACGAGAACTTCACCGTGACAGCCGTAGACGGGGTAAAGAAATACCTGTGCACCGCCTGTCACAGAACGTTTAACAGAAAAAGTCATTGCACCGAGCATTTCAAGCACGCGCACAAAGTATTCGGCGCACATTTCACATTGACTCAAGCTGAAGACGGGACGGACGTTTACAACTGTAACTCCTGCGGAAAGATCTGGAACAAGTTCATGTATTTTAGGCAGCATTTCAAAAGCGTGCACCAGAAAATAGTGGGGGGGAGGTGTGACGAGTGTGGACTGAAACTGCCGTCTGGACAGAGGGCGAGACATATGGAGGAGGTGCATGGTATTCCGGCGCCGAAATGCAACGTGTGTGGGAAGAAATTCGCGTTCCCCAGCCAGGTATTACGCCACCAGAAGATAATTCACATGGGCGAAGCCAATTACAAATGCCAGACGTGTTCAAAATGCTTCCCGACTCACGACAGGTGGAAAAGGCATCAGATAGTTCACTCCACAACCAGAGAGGACACCTGTACTTACTGTGGCAAGAGCTTTAAGTGGAAAAAGAGCCTCCAAGCCCACGTTCGGATACACTTGGAGGACAGAAGATACGTGTGCATCTGGACGGCGTATACTCTGGTCGCCGGCGATAAAGGCCCCTCATACAGCTGTAACGAGTGCAGCAAAATATTCGCCAACCGACAATATTACGCGCAGCATTACAAACATGTGCACAAAAAAATGCGCCCAACGGACTACCAATGCCGCCTCTGCGACGCGCGAATCTCGAACACATCGCGATCGTGGCACATGGAGTTGGCCCACGGTATGCCAGCACCAAAATGCAACGTCTGCGAAAAAAAATTCGACTTCCGTCATTTGTTGATCCGACACCAGAGGACCAAGCATTTGGGTGAGAAGGATCACGCTTGTCAAATATGCGGCGATGCTTTTGGTACCGCAGTGGCTTTGAAGAAGCATAGTTTGCGGCATGAGGACACTAAACCCTTTGCTTGCTCCTTCTGTGATAACACTTTCAAGTACAAAAGGAATTGGAAAGCTCACATGCAGAAACATGGAGCGACTTGCGTCTGTCCTATTTGCGACACGGAGTTTTGTCGGCCTGACGACTTGAAAGTTCATGTCAATGTAACGCATCCAGAGTTGTGTTAA
- Protein Sequence
- MDPEVVEDENFTVTAVDGVKKYLCTACHRTFNRKSHCTEHFKHAHKVFGAHFTLTQAEDGTDVYNCNSCGKIWNKFMYFRQHFKSVHQKIVGGRCDECGLKLPSGQRARHMEEVHGIPAPKCNVCGKKFAFPSQVLRHQKIIHMGEANYKCQTCSKCFPTHDRWKRHQIVHSTTREDTCTYCGKSFKWKKSLQAHVRIHLEDRRYVCIWTAYTLVAGDKGPSYSCNECSKIFANRQYYAQHYKHVHKKMRPTDYQCRLCDARISNTSRSWHMELAHGMPAPKCNVCEKKFDFRHLLIRHQRTKHLGEKDHACQICGDAFGTAVALKKHSLRHEDTKPFACSFCDNTFKYKRNWKAHMQKHGATCVCPICDTEFCRPDDLKVHVNVTHPELC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -