Tluc007954.1
Basic Information
- Insect
- Teleiodes luculella
- Gene Symbol
- -
- Assembly
- GCA_948473455.1
- Location
- OX419596.1:2814444-2821644[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.004 0.29 12.2 1.5 1 23 293 315 293 315 0.97 2 11 0.00012 0.0086 17.0 0.6 1 23 339 361 339 361 0.97 3 11 3.9e-05 0.0028 18.6 1.7 2 23 367 388 367 388 0.97 4 11 0.00091 0.065 14.3 0.1 1 23 392 415 392 415 0.94 5 11 0.0018 0.13 13.3 0.5 1 23 418 440 418 440 0.95 6 11 0.00068 0.049 14.7 0.3 2 23 532 553 531 553 0.95 7 11 2.3e-06 0.00016 22.4 4.7 1 23 601 623 601 623 0.98 8 11 0.00024 0.017 16.1 2.7 1 23 628 650 628 650 0.98 9 11 0.0007 0.05 14.6 2.8 2 23 657 679 656 679 0.95 10 11 8.3 6e+02 1.8 3.5 1 19 687 705 687 710 0.88 11 11 0.029 2 9.5 0.9 3 19 719 735 718 736 0.97
Sequence Information
- Coding Sequence
- ATGGATGCAGACGTCACCACAGCGTCAGAGGTCGCATACCCGATTCTGCTGCTTCCTAAGAAGTGCACTAACTTGGAGACCAACTGCGAAGCCACCGACAATGTCTTCATCGACGTCAACATCACCTCTCCTGACACCGAAGGAAACAGCAGTTGTATCTATAACGGATTTTGCAATATTAAGTTGATTGACAGCTTTAATTATGATGTTGACATTCTAAATACGCATCAGAAGCCATGCGAGGAGGCTCTCGATTACGACGATACATTGCCTGTTATTATAGCTGATCAGCAGCCGGAAATCCAGTCTCAGGTCTGGATAGATCCTTCTAGAAGTCCGTATGTTTACAACCGTTGTGATGTGCAGGAATCTAAAGAGAGTTACTCTGTGTGCCATCAGTCTACTAGTGTGTTGGTTGAGCACTGTAACACTTATATTACTAAGAATGGGTATAATTATAAGGAGGCAATACAGTATTCGACTCATGATGAAGTTGAGACCAGTAAGCATGCGAGGAAGCAAGTGTTTGACCATCAGATACCAGACGTACAATATGATGATGATGAGTTTGATTGTGGGGTGTTTCTGTCTCACCTTCCAGAGGAGATTATCCATGAAAAGCAAGTTAGGGCCAAAGAGGAACAAAAATTTATTGGTATCCATACTGAAAACAGTGCCCTGAAGCAACTGATGTCTCCCGGAATCCAGTCTATGTCCAAACAGAGGAAGACGATCCTGTTCCTCGGACCAGACTCCCAATGCGGCCAGACCATACAGCAGATAGCGTACTATGATCCCATGATGGAGTGCTCCGGAGAAACTGGGGTGGACAATGAAGTTGTTATTGACGACACCGACCCACCGCGGCAAAAGCGGTACCAATGCGCCAAGTGTCACCAAATCTTCGACCAGATCACCGAGTTTCGAGAGCACATGGTAAACCACAGCTCCCCGAAGTTGCACAAATACCCCTCCGTAACCGCTTCCAATGTCAAAGGCAACACAGAAGTCAGTTACAAATGCGCCGATTGTGGCAGGAATCTTAAGAGCAGAGATAAATTTGAGAGACACATTTCAGGCCACGGCGACCCCGATCGCGAATGCAACAAATGCCGTAAAGTATTCGCGTCTAAATTCACCCTCCGCGCGCACCGCAAGATACACACGCGGAAATTCCCGTGTGACTACTGCACCAAAACCTACTCCAACATCGAAGAAATGAGGGCGCATGCAGCCAAAGTCCACTTTATGTTCTTATGCGAGCAATGCGACTTCGTTGCCAACAGGCATTCGGCGTTATCCGCCCACCAACGCGTTCACAGAACTTATCACCACGACTCGAGCGAGACCGAGATGGCCGATTCGATGTTTGGTGACGTCATGAGCGACGATGACGTAATGGATCCGGACGATCCCGATTGGAAGTTAGAAGAGGAAGACGATAAAGGCTTTGACCAGACAGAAGAGAAGTACACGACAGAACAGAGCAAGTTCGATGAGATGCAGAAAGCTAATTCTGTCATCGCCAAAGTGATGTCGAATAAGATGTTCTTGGCTGGGAAGACTAAGAAAAGACATAGGAGGTATAGAAAGGTTTGCGACGTTTGTATGAAATCCTTCGACCGCGTGTCTGACTTAAAGCGTCATCTCATCGAGCACATAGTCCGCAGCACCTTAGCCAAGACACCAGTCACCAGAGCTGGCACCCTCACGATCCTGTGCGAAGTATGCCAAGCCGATACATTCTCTAAAATAGACCGCTATAAGGCCCATCTTCGCGAACACGCCAAACTAACTCTCTACAAATGCACCTTCTGCAACAAATCCTTCAGCGACTCCAGCAACTTTTCCAAACACAAGAAAATTCACGGCGCTAAGTACTTCCAATGCGACTTGTGCCAACGCAAATTCAACTCTAAAAAAATGATAACAAGGCACATGGAGTATCACAACGAAAACAAGCCGCTTCATTGCGCTTATTGTGACAAAGTGTTTCATTTTGAATCGATGTTGAATAAACACGTTAAAAGCGCTCATACTAAGAAGGTGTCTTGTAGATTCCGCTGTCGTTTTTGTCATCATTACTTTAGAACTCTGAAAGAAAAATGGGATCATGAGTGGACGGTCCATAATGTCCGCAAAATGATTGTGGATTGCCTCATCTGTGGGGCGAAATTCAGGAAATATGCAGAATTAAAAAGGCATTGTGTTGATGACCATGATGTTGAAATTCCAACGGCTAAAAAGCTATTGAAAACTAAATCTTATAAGGCTGGTCCTTAA
- Protein Sequence
- MDADVTTASEVAYPILLLPKKCTNLETNCEATDNVFIDVNITSPDTEGNSSCIYNGFCNIKLIDSFNYDVDILNTHQKPCEEALDYDDTLPVIIADQQPEIQSQVWIDPSRSPYVYNRCDVQESKESYSVCHQSTSVLVEHCNTYITKNGYNYKEAIQYSTHDEVETSKHARKQVFDHQIPDVQYDDDEFDCGVFLSHLPEEIIHEKQVRAKEEQKFIGIHTENSALKQLMSPGIQSMSKQRKTILFLGPDSQCGQTIQQIAYYDPMMECSGETGVDNEVVIDDTDPPRQKRYQCAKCHQIFDQITEFREHMVNHSSPKLHKYPSVTASNVKGNTEVSYKCADCGRNLKSRDKFERHISGHGDPDRECNKCRKVFASKFTLRAHRKIHTRKFPCDYCTKTYSNIEEMRAHAAKVHFMFLCEQCDFVANRHSALSAHQRVHRTYHHDSSETEMADSMFGDVMSDDDVMDPDDPDWKLEEEDDKGFDQTEEKYTTEQSKFDEMQKANSVIAKVMSNKMFLAGKTKKRHRRYRKVCDVCMKSFDRVSDLKRHLIEHIVRSTLAKTPVTRAGTLTILCEVCQADTFSKIDRYKAHLREHAKLTLYKCTFCNKSFSDSSNFSKHKKIHGAKYFQCDLCQRKFNSKKMITRHMEYHNENKPLHCAYCDKVFHFESMLNKHVKSAHTKKVSCRFRCRFCHHYFRTLKEKWDHEWTVHNVRKMIVDCLICGAKFRKYAELKRHCVDDHDVEIPTAKKLLKTKSYKAGP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00275652;
- 90% Identity
- -
- 80% Identity
- -