Tluc021584.1
Basic Information
- Insect
- Teleiodes luculella
- Gene Symbol
- PLAGL2
- Assembly
- GCA_948473455.1
- Location
- OX419605.1:7395702-7423233[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.011 0.79 10.8 0.6 1 23 154 176 154 176 0.98 2 10 8.6 6.1e+02 1.7 1.8 2 23 178 200 177 200 0.89 3 10 0.00011 0.008 17.1 2.6 1 23 207 230 207 230 0.90 4 10 0.0043 0.31 12.1 0.3 2 23 237 259 236 259 0.90 5 10 8.1e-06 0.00058 20.7 1.7 1 23 270 292 270 292 0.97 6 10 3.6e-05 0.0026 18.6 1.4 1 22 298 319 298 323 0.92 7 10 4.9e-06 0.00035 21.4 0.3 1 23 337 360 337 360 0.96 8 10 2.7e-06 0.0002 22.2 1.5 2 23 367 388 366 388 0.97 9 10 0.00057 0.041 14.9 3.7 1 23 398 420 398 420 0.96 10 10 0.012 0.87 10.7 1.6 1 23 426 449 426 449 0.96
Sequence Information
- Coding Sequence
- ATGGCATATTCTCCCGAAAACTACAAGACTTTAATTCATCCATTAATCAATCTGACATGTTCAAGCAAATCAGAAGACCAAATTGTCATTAATAATCATGAATTAGATGAACAATTATTCATCAAAGATGAATGTGAAGTTGGAGACATAACGGGCCATTTTACAAGTGAAATAGAAATAAAGAAGGAAGAGCAAAACCAAGACCTGGGGAATGATTTTGAGGCTGTCAACATTGATGAACCCACAAACTATGATAGTTCAGAGCATGCTGTAGATAATATCACCGAATTGACCCGGACTGGTCCTAACGATGTTGGAGAGGCAAGCAGGCAGGCAGATATGAAACAACCAAAAAAGGATTTTAATGATTATTGTGCTGGAGTGGTAACTTTAACAAAAGAAGAATTAAAAGAGGAAAGAGAGAGAAAAGCGACTGAAACGAAGTATTTAGAAGCCACATTCAAATGTGCAGATTGCATCAAAATGTTTGTTATGAAGACTCCATACGAAAACCATATGAAATTGCACGATAAGTGCTCTGTGTGCCCCACCCGGCGCAACTGCGAGGCTTCGCTAAAAGATCACTACCTGCGCACGCACAGCGATGGACGCTACCACTACTCCTGCCCAGTGTGCTTCAAACAATTCAAGTTCAGATCGTCGCTGCAGAAGCACAAGGCAGACAAGCACGAAGCGCGAGCGCGGATCAGCTGCAAATACTGCGACAGAACATTCGCCTCAGAAAGCGCTATCGGCTACCATTTGAAATTCAACCACACGGCCGAAGAGGCGGCGACATTAAAACCCCACACTTGCCCCGAGTGTGGACGCACCTTCAAGATGCTGCAGAAACTGAACAACCACATGGTGTCACACACCTCGCGCCGCGACCACTACTGCGTCGAGTGTGACAAGAGTTTCAAGACTAGAACAGCATTGAACCAACACTTCAAAACAGTTGTAGCACACAATCTAGACAAAGTTGGCGGGCCACAGGAAAATATAAGTTACCCGTGCCCACAATGCGAGAAACAGTTCCCTCAGAAGAAAGCCTTAACCAGACACGTCAACAACATGCACCTAAACCGCAACCTTCTGCAGTGCAGCCAGTGCGGAAAGACGTTTAGATCTAAGAAGCGGCTGACCATTCACATTCTCTCCCATGAAGACGAATTCGAAAGGCACAAGAAACACTGTTGCACTGTATGCAACAAGCGATTTTACGAGAAAGGCGTGCTAGCGAAACACATGAACATACATACGGGCGAGAAACCTTTTCAGTGCGGTCATTGCCCCGCGCAGTTCGCTCACAGCGGCAGCCGCTACAACCACGTGCGCCTCGTACACCTCAACCTCACGCGCAGGGGCGCTCCTAAAGGCGCACAGCCTAGGAAACAGAGACTCTAA
- Protein Sequence
- MAYSPENYKTLIHPLINLTCSSKSEDQIVINNHELDEQLFIKDECEVGDITGHFTSEIEIKKEEQNQDLGNDFEAVNIDEPTNYDSSEHAVDNITELTRTGPNDVGEASRQADMKQPKKDFNDYCAGVVTLTKEELKEERERKATETKYLEATFKCADCIKMFVMKTPYENHMKLHDKCSVCPTRRNCEASLKDHYLRTHSDGRYHYSCPVCFKQFKFRSSLQKHKADKHEARARISCKYCDRTFASESAIGYHLKFNHTAEEAATLKPHTCPECGRTFKMLQKLNNHMVSHTSRRDHYCVECDKSFKTRTALNQHFKTVVAHNLDKVGGPQENISYPCPQCEKQFPQKKALTRHVNNMHLNRNLLQCSQCGKTFRSKKRLTIHILSHEDEFERHKKHCCTVCNKRFYEKGVLAKHMNIHTGEKPFQCGHCPAQFAHSGSRYNHVRLVHLNLTRRGAPKGAQPRKQRL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -