Tluc015677.1
Basic Information
- Insect
- Teleiodes luculella
- Gene Symbol
- -
- Assembly
- GCA_948473455.1
- Location
- OX419607.1:2204440-2206891[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.013 0.96 10.6 7.4 1 23 153 176 153 176 0.96 2 18 7.9e-05 0.0057 17.6 1.1 1 23 185 208 185 208 0.97 3 18 0.0045 0.32 12.1 0.8 2 23 220 242 220 242 0.97 4 18 0.0024 0.17 12.9 1.0 1 23 251 274 251 274 0.96 5 18 0.0013 0.097 13.7 3.6 2 23 287 309 286 310 0.96 6 18 2.4e-05 0.0018 19.2 1.8 2 23 335 357 334 357 0.96 7 18 0.033 2.4 9.3 2.2 1 23 366 389 366 389 0.97 8 18 0.013 0.94 10.6 1.2 2 20 394 412 393 414 0.92 9 18 6.3e-05 0.0046 17.9 2.4 2 21 419 438 419 441 0.95 10 18 0.018 1.3 10.1 0.7 3 23 451 472 450 472 0.95 11 18 0.0021 0.15 13.1 4.6 1 23 477 500 477 500 0.93 12 18 0.0066 0.47 11.5 2.5 2 23 513 535 512 535 0.93 13 18 0.0011 0.076 14.0 0.8 3 23 557 578 555 578 0.93 14 18 0.27 19 6.5 1.3 2 23 585 606 584 606 0.93 15 18 0.021 1.5 9.9 1.3 2 23 613 634 612 634 0.96 16 18 4.6 3.3e+02 2.6 2.8 1 23 671 693 671 693 0.88 17 18 0.0064 0.46 11.6 0.4 1 23 700 722 700 722 0.97 18 18 0.38 28 6.0 2.3 1 23 728 751 728 751 0.96
Sequence Information
- Coding Sequence
- ATGGATTTGACAATCAAAACAGAGCCCACAGACCTATCCGAACGTAAGGATCCCACGTCATTCCTTCCTGAAGAACCAATGACTTATGAAATAAAAAATAAAAAGAAAAAGAAGAAGAAAAAGAAGAGACAAGAAGATGATCCATTTAAAGACATAGGAGACGCTGTAGTTACTACTGAAAGAGTTGTTATTCCTGAAACGGACTCTGAATTGGAGCCTAGACTCGACCCTGAAGTTACAATAAAAGTTGAGAACATTGAAGTGGAGTTGGATTTTAACGACTTTACATGCAATGATGAATTAATGGTGCAGCAAGATGAAGACAGTCAAGAACAAGCTATAAATCTAGATCAACAGAGTAAGGAAGCCGTCCTACTCACTTTTGAGAGTGTTGTCAATGAGAAAAAAATAAATATACCTGAAATCAGTGAAAATTCTACTGTCATATCTAATGGTCACATGTGTAAAGTTTGTCACCTACTTTTCAAAAACCAAAAAACACTCAAAATGCACCAAAAGCGCAAGCATAAAGCATTTAGACGTTTCTGCAAACATGTTTGTGATCACTGTGGAATGGCTTACGATGCTAAGAGCAGTTTAGCAGCTCATATGAAAAGAAGACATGCACCTGGCGTTGACAATGATAACACAGAAAGAACTTGTGAAGAATGTTCACTTGTTTTCAAAGGCATGGGTAGGTTACGTATGCATATGAGAAGGAAACATGGAGCATTTGAAGATGCCTTCAAGCATATCTGCGAAGACTGTGGTATCACATACGACAAACTCAGGAGCTTACTTGTTCACAGACAGAGGAAACATTCTAATGTGAAAAGTGAGAATTTAGACCATTGGATCCAATGTCCATTCTGTTCTAAAATGTTTAACAAGAGAGAGACTTACGGTAGACACATGCAAAGGAAGCATCATGGTGAAAATGGTGAGATTAAACTTCCAACAGAAGAGGAAAAGGAGACTTATTTGAATAAGGCAGGAGAGATAGTTTGTAAGCATTGCCCGTTGGTGTTTTCAAATTTAACTTTCCTCAAAGTACATATGAGGAGGAAGCATAATGCTTTTACAGATGATTTTAAGTTTAAATGCCGTTTGTGCAATTTGTCTTACGATAAAATGCAGAGTCTTAAAACCCATGTTTTACGAAAGCATGACCAGGAGTCGTATTGCAAGATATGCCAAAAGCAATTTAATAGTAGGGAGTTATATTTAAATCATACACATGTAAAAATGGCAAGGGAATGCCATATTTGTGGACAAATATTTTCCACTTTAGGTGGTTTGAGGAAGCATATGCGTTGTACTCACAAAATAGATACACCGAAGACGGTGTTTTGCAAAATTTGCAATGAAGGCTTTTCTGACAAACGTCGATTGAAGCCACATTTATTGAGAGTACATTATAAAGTAACATATAACTGTCAATATTGCAACAAAGTGTTTAAAGCTAAAGAAAGTTATCACAGACACCTGCTCTTTAAACATGGCAATGAAACAGCAAAATTAAACGATGTATTACAAAAATGTGAATCATGTACGGAAACATTTACTAATGAATTTGAATTGTGCAAACATGTTAACTTCGCTCATAGAGAAGATGAAAATAACGTAAAATCGGAGAATGATGACCAACTTGAAGAAAACCCATTTTGGTGTACGAAATGTTCACTTAGATTCAGAACATGGGAAGAACTACGGTCACATTATGAAGAGACTCATTACACAGAGAAAAGTTGCATCTGTCAAATATGTGGGCAGCAAATTAAAGCAACTGATCTCCAAAAACACATAAAGCAAACCCATTCAGAAGGAGAAGAACTGGTGTGTCGATATTGTGATTTTAAAACTAAAGTAAAAGTGACTATGACACAGCACATGTTGAGGCACAAAAACGCTAAAACGTTGCATTGCGACTTCCAAAATTGTAGGTACAACACCTATTATGAAAGCGCAATGGAAAAACATAAAAAGAAACATCTAGAACAGGGTGTGAAGTTCCAATGTACACATTGTCCATTCCAGACTATGAATAAATATATCTTGAGATATCACGAAGAAAATCATGTCACAGGCAAGAAGCGTTACAATTGTGATAAATGTGACTATGCAACAAATTTACCAGCTAACTTAATTCAACATAAATACAAACATTCAACTGAAAAACGTTTTAAATGTGAACTTTGTCCATTTGCAACAAAATATAATACTTCTTTACGTTTCCATGTTAAAAAGAAGCACTGTGATCTCCCGTTGTAA
- Protein Sequence
- MDLTIKTEPTDLSERKDPTSFLPEEPMTYEIKNKKKKKKKKKRQEDDPFKDIGDAVVTTERVVIPETDSELEPRLDPEVTIKVENIEVELDFNDFTCNDELMVQQDEDSQEQAINLDQQSKEAVLLTFESVVNEKKINIPEISENSTVISNGHMCKVCHLLFKNQKTLKMHQKRKHKAFRRFCKHVCDHCGMAYDAKSSLAAHMKRRHAPGVDNDNTERTCEECSLVFKGMGRLRMHMRRKHGAFEDAFKHICEDCGITYDKLRSLLVHRQRKHSNVKSENLDHWIQCPFCSKMFNKRETYGRHMQRKHHGENGEIKLPTEEEKETYLNKAGEIVCKHCPLVFSNLTFLKVHMRRKHNAFTDDFKFKCRLCNLSYDKMQSLKTHVLRKHDQESYCKICQKQFNSRELYLNHTHVKMARECHICGQIFSTLGGLRKHMRCTHKIDTPKTVFCKICNEGFSDKRRLKPHLLRVHYKVTYNCQYCNKVFKAKESYHRHLLFKHGNETAKLNDVLQKCESCTETFTNEFELCKHVNFAHREDENNVKSENDDQLEENPFWCTKCSLRFRTWEELRSHYEETHYTEKSCICQICGQQIKATDLQKHIKQTHSEGEELVCRYCDFKTKVKVTMTQHMLRHKNAKTLHCDFQNCRYNTYYESAMEKHKKKHLEQGVKFQCTHCPFQTMNKYILRYHEENHVTGKKRYNCDKCDYATNLPANLIQHKYKHSTEKRFKCELCPFATKYNTSLRFHVKKKHCDLPL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00275595;
- 90% Identity
- -
- 80% Identity
- -