Tluc019034.1
Basic Information
- Insect
- Teleiodes luculella
- Gene Symbol
- -
- Assembly
- GCA_948473455.1
- Location
- OX419611.1:1265403-1288955[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00041 0.029 15.3 1.9 2 23 168 190 167 190 0.95 2 15 0.056 4 8.6 0.1 3 20 202 219 201 221 0.89 3 15 5.6e-05 0.004 18.1 0.6 3 23 231 252 230 252 0.98 4 15 1.6 1.2e+02 4.0 2.2 1 23 261 284 261 284 0.88 5 15 0.011 0.79 10.8 0.1 2 23 380 401 379 401 0.97 6 15 0.015 1.1 10.4 0.1 1 20 533 552 533 554 0.94 7 15 0.053 3.8 8.7 0.1 2 23 582 604 581 604 0.95 8 15 1.4 1e+02 4.2 3.2 1 23 627 649 627 649 0.97 9 15 0.0014 0.1 13.6 0.8 1 23 653 675 653 675 0.98 10 15 0.01 0.74 10.9 1.1 1 23 680 703 680 703 0.92 11 15 0.032 2.3 9.4 0.4 2 23 711 733 710 733 0.93 12 15 0.00039 0.028 15.4 5.2 1 23 740 762 740 763 0.95 13 15 0.0034 0.24 12.5 0.6 1 23 769 791 769 791 0.95 14 15 1.3e-05 0.00095 20.0 3.8 2 23 798 819 797 819 0.96 15 15 3.7e-05 0.0026 18.6 4.4 1 23 825 847 825 847 0.98
Sequence Information
- Coding Sequence
- ATGGACAGTCAAAAGAACAATGGTATGTGCCGGTGCTGTGCTTCCGAAGGGACTTATAAAGACGTTAAAACTGCTTACCAGTGGATGGGTGAAGAAGAGATTTATGCGGACATGTTACGAGAATGTTTGGATATATCTCTGTGCCCGGATGACGCGGGGGAGGTGGGGGGCGGTATATGCGAGGTGTGCATCACGCAGCTGCGGAACGCTTCCAACTTCAAGAAGCAGGTGCTGCTTACAGAAGACCAGTTCAAGCGGAGGCTGCAGGAGGGGTTGTACAAAAGCGACATAGTGAAGGTTGAGATGACAGCTATGGAGCAGGATTCTGACAACGACAACGACTTGTCTGAGGACTATGCGACAGAATTCGAGGTCCCAGTGAAGACGGAGTCGCTTGAGGAGCCGAAAACGAGGAAGAGAGGCGCCAAAGCCAAGGCTTCCACGTCGCGCGCCAAGAAGATGAAAGCTGAAGACGGCGAGAGCTCGAAACAACAAGAAACTAGCTGTCAATTATGCAAATACGACTTTCGAAGTGCTTTCAACCTAAAACGCCATCTATTGAGCAAGCACGGAATCGATACAGTTGTTACCAAAAAGCGTTTATGCGAAGACTGCGGTCATGTATTCAGAAATGCGGACGTCCAAGCGAAGCATCTAGCCAAAGGCTGTCCACAGACTAAAACAAACTTGTGTGTCGAATGCAACGTGATGTTTGTAACGAAATCGGACATGTTTAAACATATGCGTACTTTACACTGGGTCAGAGCTGCGTTGAGGGAGTTTAAATGCCCTCTGTGCGAGGAGACCCTTAGGGATCACGACGAACACGATCGTCACTTGTTTGTTTTCCACGACGTCGCTGTGAATTATCAAGATTACCGTTTTGCGTCAGATGAAGAGTTGAATAAATGGAAACAAAGGATAGAGGCGACACAAAACGTATATTTCACGAAACGACATTGCGATCAAGGCATTTATTACCATTGTTACCCGTTGAAACACGTCGGATCTACCAGAAGCGATACCAAATACGTCTGTCCCGCGAGAATTGAAATCTCACGCTATTCCGATGGTATTAAAGTTGTGTTTCAATCGACGCATGTGTGTGAGAACGACGAGGGAGCAGGACGGAAGATATATTGCTCTCTCTGCGGTGTTCAGCTTAACACGTACGAAGATTTGAACTCGCATTTGATTACACATGGTATTGAAGTGAAGGTTGTCTATAGGAGTTTTGCGTCTTACGAAGATTTTTTCAAATGGAAATCCGATGTAGAAAACACAACTTTCCGTTTCTACACACGCGCCACTAACACCAATAACCATTCTGGGCAAATTGTTAAAACATCATATTACCTGTGTTCAAAAATCGGAAAAGACGTTCTTAAAACATGCCCCGCTAGGATCATTCTCGCTTGGAACGAGAAAAGTGACAGATGTGACGTCACATATTACGGAAAGGCTGGCGTCAAACGCAGGAAAAAGAAAAAGGGCGATGAAAGCGCTACGCCTGAACGCGTTGAGCACAGAGTAAACTTAACAGCCATACTGCAGTTTTCGAACGCCAGCCCGTTCCGAGACAAGACAATGAAGGGGTTCGCCTGCCTTTACTGCGCTAAGTATTTCAAAAACATAGACGATTTACGCGCCCACACCGCACAGCAATCGGAAAAGGATAAACTCAACTCGATGATCGATTATAAACTCAGTTACAACCCCATTAAAGTTGATATTACCAATCTCAGGTGCAACGTTTGCGACGCTTCGATGAAAGACCTCAACGATTTGAAAGATCATCTCACTAGCGTTCATAATAAAACCATTCATAAGAATATTAAAGATATTATTCTGCCTTTTCGCTTGGATGATGGTACCAATTACACTTGCGTTATATGTTCAGTAGTTCACATCTCATTTAAGAATCTCTACCATCATATGAGCAGTCATTATCGGAATTACTGCTGCAAGAAATGCGGGGCCGGTTACATCACCATTGCGGCGCTCAGAAAGCACGGTAAGACGCATTTCCAGGGACATTTCCCATGCGATTATTGTGAGAAATCTTATACGTCGTTGACTAAGAAACGTAACCACGAAAAGGGTGTACACACTGGAGGTTGGCTACGCAACAAATGCCCTCATTGCCCTGAAATTTTCGTCTCCTATTACGACAGAAGCGAGCATCTCGTGAAAGTACACAACGAAACTCCCGTCATATACCCTTGTAACGCGTGTAACAAGGTTTACAAAAAGAAGTTTGAATTGAATCGCCATATCAAACATCACCATTTACAGCAAAAGAGTTACTTATGCGACCAATGCAACGCTAAATTTTTCTCCAAACGAGGTCTGACTGACCACATAGCTCGTCACGCCGGCGGCGAAGTTTGTTCCTGCGAAGTTTGTGGTAAAACGTTCTCTAGGTTCCGCACTCTAAAAGACCATATGAAGCTACATGACGAAGATAAGAGATACCAATGCGAGATTTGCAAGAAGACGTTTATGCAGAAATGTAGCTTGAAGAGCCACGTGAGACTGCATCAAGACGATTTGGATATTTTCAAGGAGTTTGATGATGTTAAACATTTGATTGACAATAGAGATATGACGCTCAAAGAAATAGCCGAAGAGAATAAAAAGAAAGAACAGGAGGATAAGTTGAAAGGGCTTTTTGCCTAG
- Protein Sequence
- MDSQKNNGMCRCCASEGTYKDVKTAYQWMGEEEIYADMLRECLDISLCPDDAGEVGGGICEVCITQLRNASNFKKQVLLTEDQFKRRLQEGLYKSDIVKVEMTAMEQDSDNDNDLSEDYATEFEVPVKTESLEEPKTRKRGAKAKASTSRAKKMKAEDGESSKQQETSCQLCKYDFRSAFNLKRHLLSKHGIDTVVTKKRLCEDCGHVFRNADVQAKHLAKGCPQTKTNLCVECNVMFVTKSDMFKHMRTLHWVRAALREFKCPLCEETLRDHDEHDRHLFVFHDVAVNYQDYRFASDEELNKWKQRIEATQNVYFTKRHCDQGIYYHCYPLKHVGSTRSDTKYVCPARIEISRYSDGIKVVFQSTHVCENDEGAGRKIYCSLCGVQLNTYEDLNSHLITHGIEVKVVYRSFASYEDFFKWKSDVENTTFRFYTRATNTNNHSGQIVKTSYYLCSKIGKDVLKTCPARIILAWNEKSDRCDVTYYGKAGVKRRKKKKGDESATPERVEHRVNLTAILQFSNASPFRDKTMKGFACLYCAKYFKNIDDLRAHTAQQSEKDKLNSMIDYKLSYNPIKVDITNLRCNVCDASMKDLNDLKDHLTSVHNKTIHKNIKDIILPFRLDDGTNYTCVICSVVHISFKNLYHHMSSHYRNYCCKKCGAGYITIAALRKHGKTHFQGHFPCDYCEKSYTSLTKKRNHEKGVHTGGWLRNKCPHCPEIFVSYYDRSEHLVKVHNETPVIYPCNACNKVYKKKFELNRHIKHHHLQQKSYLCDQCNAKFFSKRGLTDHIARHAGGEVCSCEVCGKTFSRFRTLKDHMKLHDEDKRYQCEICKKTFMQKCSLKSHVRLHQDDLDIFKEFDDVKHLIDNRDMTLKEIAEENKKKEQEDKLKGLFA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -