Tluc019026.1
Basic Information
- Insect
- Teleiodes luculella
- Gene Symbol
- -
- Assembly
- GCA_948473455.1
- Location
- OX419611.1:1184142-1188138[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0036 0.26 12.4 0.9 1 23 48 70 48 70 0.96 2 15 0.42 30 5.9 0.0 2 23 98 120 97 120 0.89 3 15 0.031 2.2 9.4 2.0 2 23 141 162 140 163 0.93 4 15 7.2e-05 0.0052 17.7 0.2 1 23 168 191 168 191 0.97 5 15 0.029 2.1 9.5 1.2 1 23 196 219 196 219 0.96 6 15 0.00013 0.0091 16.9 0.4 2 23 222 244 222 244 0.96 7 15 0.029 2.1 9.5 1.7 2 21 251 270 250 271 0.93 8 15 0.0009 0.065 14.3 1.7 1 23 324 347 324 347 0.94 9 15 0.0011 0.082 13.9 0.2 2 23 420 442 419 442 0.95 10 15 5.9e-05 0.0042 18.0 0.5 3 23 449 470 447 470 0.93 11 15 0.0075 0.54 11.4 2.6 2 23 475 497 474 497 0.94 12 15 0.00044 0.032 15.2 2.4 1 23 502 525 502 525 0.95 13 15 8.4e-06 0.0006 20.7 3.3 1 23 529 552 529 552 0.97 14 15 0.00022 0.016 16.2 0.3 2 23 559 580 558 580 0.96 15 15 3.1e-06 0.00022 22.0 2.3 1 23 586 608 586 608 0.98
Sequence Information
- Coding Sequence
- ATGCCAACGGTCCTCCCTGATGGGGCAGGTCGGCCTTTATTTTCAGGCCAGGCAGACGGATTCACATCAGAACGTCGGCGAAAAAACCTTCAGGCCCTTTTCAACAACACCTCAATACTCCCATTCAAATGGAAAGGCAAATATCTTTGCTTCTATTGCGGCCAAAGCACTGCCGATTACTTAGACCTCAAAACGCATACGAAATCACACGGACCTTGCACAACTAAAGATTACTCCTTAAAAGTCATTAAAGGCAACCACATAGAGATCAAAATTGACGTATCGGATATCGTTTGTAATATTTGCAGTGAACCGTTTGGAAGAGTCGGCGAAATTATCGATCATTTGATCGGTAAACATAAGTTAGAGTACGATAAATCGATAGATACACCTCTACAAGAGTACAGGTTGTCAGATTTGCATTGTCTTCAATGTGATCAGCTGTTCTCTTACTTCGGTAACCTAGTTTCACATGTAAATGTACACCATCCAGAAAACTGTTACATTTGCGACGAATGTGGAGCTACATACAACAAAAAGAGGGATCTAGCATTGCATATCAGAAACAATCATAAACAAGGCGGTTACAAATGTGAACAGTGCTCTAAACTGTTTGCAACAAAGTTGATTTTAGTTAAACATCAAAACAACTATCACTTTCGCAGGTGTAAAATTTGTAACGGCTCTTTTGCGTCGTACACGTTGTTGCAAAGGCATATGGTTACTGAGCATCCTGAGGATGGATGTTTAAAATGCAAATATTGTTCCAAAGAACTTCATTCCAAACAAGGTCTTAAACAACATATTAGTAAGTGCAAAGTCAGAATGCTTACAATGGACACGTCGCCCAACAACCTTGTTAATGACGTCATCGAACCCAAAAAGCGACAAAACGTCGCTCAAATAAGACAAAATATTATCTGCGTGTTAAATATGTCAACCGCTGTGCCTTTTCGATTTTTCGCCAAATTTTTCTGCTTCTATTGCTCTAAAAAGTTCATCGATTTCGATGAATTAAAATCACACACTGCATCTGAACATCCAATTTGCGATTTGAAATTTAAATGCATGAAGAAATGCAAAGGGGAACGCACAACGGTTAAAATTGACATTTCTTCGCTATCTTGCAAACTATGTTGTCAGTCTATGAGCGGGCTTCAAGAACTTATAGACCATATCGTAAGGGAACACGGTGCAAATTACGATAAAGACCTTACTGGGTGTCTTGAGCCATTCAAAATGGTTAAAGACGACATGCCTTGCCCTATATGCTCGAAGACTTTCCGTTACTTCGGCATATTGTTGCGACACATCAACTCCGAACATTCCGGAAACAATAGCATCTGCGATTTTTGCGGTCGCAGCTTCAAAAACGTAGCTAACCTCAACGTCCACATTACACACGCACACACAGGTGCCACAGAATGCGATATATGCTCAGCTAAATTCAGGAACCAATGGTGCCTATCCAGGCATAAAGCTAAAAGGCACAACGCCAAAGACTTCAAATGTCCGAAATGTCCAGAAATGTTTCAATCTCAGTACCACAAACAAAAGCATCTAATCCAAGTGCATAACGAAGGTCACAGGTGCGATGTATGTGGACGAATGTTCACTAGAAACTCGTTTATGAAAGATCATATTAGACGGACACATTTGAAAGAGAAAAACGTGCCATGCTCGGTTTGTAACGAAAGATTCTTCGACAATTATTTACTGAGAATGCATATGGTGAAGCATGAGGGCGACAGGAAGTTTACTTGCGGCGTTTGCGGTAAATCTTTCTTGCGTAAGAGCAATCTGTGTTCGCATATGGAGATGCATAAAAAGTACGGGCACTTGCAAAGCGAATCGTGTTGA
- Protein Sequence
- MPTVLPDGAGRPLFSGQADGFTSERRRKNLQALFNNTSILPFKWKGKYLCFYCGQSTADYLDLKTHTKSHGPCTTKDYSLKVIKGNHIEIKIDVSDIVCNICSEPFGRVGEIIDHLIGKHKLEYDKSIDTPLQEYRLSDLHCLQCDQLFSYFGNLVSHVNVHHPENCYICDECGATYNKKRDLALHIRNNHKQGGYKCEQCSKLFATKLILVKHQNNYHFRRCKICNGSFASYTLLQRHMVTEHPEDGCLKCKYCSKELHSKQGLKQHISKCKVRMLTMDTSPNNLVNDVIEPKKRQNVAQIRQNIICVLNMSTAVPFRFFAKFFCFYCSKKFIDFDELKSHTASEHPICDLKFKCMKKCKGERTTVKIDISSLSCKLCCQSMSGLQELIDHIVREHGANYDKDLTGCLEPFKMVKDDMPCPICSKTFRYFGILLRHINSEHSGNNSICDFCGRSFKNVANLNVHITHAHTGATECDICSAKFRNQWCLSRHKAKRHNAKDFKCPKCPEMFQSQYHKQKHLIQVHNEGHRCDVCGRMFTRNSFMKDHIRRTHLKEKNVPCSVCNERFFDNYLLRMHMVKHEGDRKFTCGVCGKSFLRKSNLCSHMEMHKKYGHLQSESC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -