Tluc025288.1
Basic Information
- Insect
- Teleiodes luculella
- Gene Symbol
- -
- Assembly
- GCA_948473455.1
- Location
- OX419609.1:1590134-1591699[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.1e-06 7.6e-05 23.5 0.8 3 23 109 130 108 130 0.97 2 13 8.1e-06 0.00059 20.7 1.7 2 23 138 160 137 160 0.96 3 13 0.0012 0.083 13.9 1.4 2 23 167 189 166 189 0.93 4 13 6e-06 0.00043 21.1 0.4 3 23 198 219 197 219 0.96 5 13 0.0009 0.064 14.3 0.7 3 23 228 249 226 249 0.95 6 13 0.00065 0.047 14.7 1.1 1 23 256 279 256 279 0.96 7 13 2.5e-05 0.0018 19.2 1.6 3 23 286 307 285 307 0.94 8 13 0.06 4.3 8.5 0.4 2 23 323 345 322 345 0.95 9 13 0.034 2.5 9.3 2.0 1 23 352 375 352 375 0.96 10 13 0.00023 0.016 16.1 0.2 3 23 382 403 381 403 0.97 11 13 0.14 10 7.3 2.2 2 23 411 433 410 433 0.90 12 13 3.9e-06 0.00028 21.7 3.8 1 23 439 461 439 461 0.99 13 13 0.0087 0.62 11.2 2.1 1 23 467 490 467 490 0.98
Sequence Information
- Coding Sequence
- ATGGAAGAGCCGCCACCCCCACCTGTTACTCTGTCAAATATAAGAATAGAAGTTGAATTGGAGACGAATACAGAAAATTCTATGACACAACCAACAACTACAACCGTAGAAACATTGCAGATGCCTGTACCGATACAAGAGTTCAAAGATAGTAATGAAGACTTCATACCGTTAAAAGTAGAAATAAAAGTTGAAGACGGCATTATAGAGCCTACCTATGGAGATCCATACTCGGTCTTTGGACTGGAAGAGACATCAACAAACATCAACATGGACAGTATAAAAGAAAAAGTTTACAGCGACGGACGGAGGAACAGAATTCTGTGTCCTAAATGTGGCAAAGACTTCAAGAACAGAGCGAACTTGAAAAATCATCTAAAATATATCCATCCTTCAGAAGATGCTGAAGTTGAATGTACAGTATGTTACCGAACTTTCAAATCCAAAGCTCATTTGCGTACACATATAAACTCTGTGCATGCAGAAGTTAAAGAAGTGACATGTTCTCAGTGTGATAAAACATTTTTAAACCAGAAAAAGCTTAAAAACCATATATTTTATGCGCACCCTCAACCGCAGGACTCTGCTATCTGTCAAATTTGCCAGAAAACTTATAAAAGTGCAATCAATTTAAAGATTCACATGAGACAAGTCCATCCTCCAGAAGATAGGAGTGTGAACTGCCAATTCTGTGCAAAGAGTTTCAAAAATGATATGTTGTTGCAACGGCACATTAAATGGAGTCATCCCCCTGACGGTATGATGTACCGATGCCCACAGTGCGGGCGGACCTTACCATCCTTGCAGTGCTATCAAAAACACATTGAGAATGTCCATTCTAATACAGAAGCATTCTGCAAGATCTGTTCTAGGAGTTTCAAAACGCAAAAGAATTTAGACAGGCATTTGATTAATGTTCACAGCGGGCAAAAGCCTGAACCAAAAATTTGGAGGATCGGAGATAAAGAATGCCCTGAATGTTGCAAATTATTCATAACTCAAAATGCATTAGACTGGCATATTGAACGAGTACACAACAGTGAAAGAAAACAACATGTGTGCGATATATGTTTTAAAGAACTGTCTGACGCCCCAAGTGTGAAAAGGCATAAGGAAACATGTCATTCCATGCAGATTGCGGCATGTTATGTGTGTCAGAAAGAATTCAAGTCTGCGATTGATGTACAAAGACATATCAGAGTAACGCATGCCACTCCAGACCAGAAAGTGACTTGTGAGATATGCCAGAAAGAATTTAAGTGTTTGATGCATTTGAGAATCCATTCCAACGCAGTCCATCCGAAGGACGGATCGTACTCTTGTGATATTTGTAATAAGGAATTTACTTCAAAGAAGTACATGCAGAAGCATAGAAAAACCCATGTTGCAACGAAAGACTATCAATGTGATGTCTGTTTTAAATATTATAAATCAATTACAGATGTAAACAAACATAAAAAGCGAGTACACATGAATACAAGTGAAGTTATAATAACGCCTGATATTAGTACCATTGGTATACCAATTCCCACTGTTAGTATACCAGGTTCCACAGAAAATAATTAA
- Protein Sequence
- MEEPPPPPVTLSNIRIEVELETNTENSMTQPTTTTVETLQMPVPIQEFKDSNEDFIPLKVEIKVEDGIIEPTYGDPYSVFGLEETSTNINMDSIKEKVYSDGRRNRILCPKCGKDFKNRANLKNHLKYIHPSEDAEVECTVCYRTFKSKAHLRTHINSVHAEVKEVTCSQCDKTFLNQKKLKNHIFYAHPQPQDSAICQICQKTYKSAINLKIHMRQVHPPEDRSVNCQFCAKSFKNDMLLQRHIKWSHPPDGMMYRCPQCGRTLPSLQCYQKHIENVHSNTEAFCKICSRSFKTQKNLDRHLINVHSGQKPEPKIWRIGDKECPECCKLFITQNALDWHIERVHNSERKQHVCDICFKELSDAPSVKRHKETCHSMQIAACYVCQKEFKSAIDVQRHIRVTHATPDQKVTCEICQKEFKCLMHLRIHSNAVHPKDGSYSCDICNKEFTSKKYMQKHRKTHVATKDYQCDVCFKYYKSITDVNKHKKRVHMNTSEVIITPDISTIGIPIPTVSIPGSTENN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00275568;
- 90% Identity
- -
- 80% Identity
- -