Timp019781.2
Basic Information
- Insect
- Teinopalpus imperialis
- Gene Symbol
- -
- Assembly
- GCA_029286865.1
- Location
- JAGSMU010000038.1:3251115-3264598[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.2 1.3e+02 4.2 0.5 3 23 231 252 229 252 0.92 2 12 0.4 45 5.6 1.4 2 20 290 308 289 310 0.90 3 12 0.001 0.11 13.8 3.3 3 23 712 732 710 732 0.96 4 12 5.3 5.9e+02 2.1 2.5 2 23 738 759 737 759 0.96 5 12 0.0051 0.56 11.6 5.3 1 23 777 798 777 798 0.96 6 12 0.0024 0.26 12.6 0.8 2 23 848 869 847 869 0.94 7 12 0.041 4.6 8.7 1.4 2 23 886 907 885 907 0.95 8 12 3.5e-06 0.00039 21.6 2.4 1 23 913 935 913 935 0.98 9 12 0.00012 0.014 16.7 0.3 1 23 940 962 940 962 0.97 10 12 0.0074 0.83 11.1 1.9 2 23 968 990 967 990 0.95 11 12 0.69 77 4.9 1.1 1 10 995 1004 995 1004 0.96 12 12 0.00068 0.076 14.3 0.3 3 23 1027 1048 1026 1048 0.96
Sequence Information
- Coding Sequence
- ATGAATACACACTTCAAGCAGAAACCAAGAAAATCCCAACTACAATTGCGTGATATTTTAGAAGATGAAGATGAAAACACTTTTATACTGCAGgtcACTCATCCTGTAAAACAACATACATTAACAGTAACCAGTATACGTAAAGGTATAGAGGcgcaatcaataataaataccaaACCGTCTGATAAATACATTGATATAGCCATCAGGAATTTCCATGGCAAATTTAGGAAACCCTTAAGATTGCTCCACGATCAACTAATTTACAAAGCAATTGAACAATGGAAAGAATGGTATGAAATATGCCCTGAGATTAGAGATTCACCCTTGTTATATAAATGCTACATCTGCAATATAGGCTGGTGGAGGCTCAACCCATTCCGGGAACACATACAGGAACACGATGATTTTATTGTCCAAAGTGAACCTTTTCACCACGAATTCTTTATAGTGGCGGGCACAACTCAATCAACAGAAGTGAGGAGTGTAAAAGTTAATTCCAATTGCTGGAAATGTGGCAAACCATCCAAATTCCACACTGTCAATGATATGATGTTGAAATACATATGCGTGGGTTGCAATGCTATTTTTGTCACATGCACCAAACTGAAATGTCACGAAAGCATATGCAAACATTATATTGATTTGAAATGTAAAGAACTTCAGATGGATCAATCAGACGGTATAATCTGCAATATATGCACCCTCTACTGCGAATCACAAAATGTGTTACGCGATCACTTACTTGAGTATCATTGGCCGAGGCCAGATGAACCTGTGTTAATTCATTTGAAGAGGTGTAAACTTTGCAATAGTAATTATTACATCCACAAATATCATGATTGTCCGAAGAAGAGTAAAACTTTAAAGTGCAACTTTTGCTTTAGAAAATTTATCTCGAAAAGCTTTCAGTATTTACATATGGTTACTAATGAAAGCTACCTACCGTGCGTAGTCTGCGATAAGTATCACAAACAGTGTGCGTTGCTTGAGCATATGGTACAACATTCAAAGAATTATGCATTTGTATTGTGGTGTTGCAAGTGTGAAAACAATGTCTTGTTCACGAAGTATCAGATCTTTAGGAATCATATGATGCACTATAGACGAACAGTGGATAGAAAGCGGTGGAGTGATAAGatcTTGTTACCAGTAAATTGTATAAACGGAGAAGTAGTAACATCACAGATCATTCTAAATATACCagAACCAGAGGTTGATGAGTTTATTAATGGATTAGAACATTTCAAGAATGCTTTTCGAAGGGCAATCATACAAGACCCTATCAAGGAAGATGATGTGATAACTATAGAAGATAATGTTCAACAAATCAATCAGCAACTGCCAAAAGTAGATACAAGAAGAGTAAATATTAAAGACGATCCAGATAGGTATGCTCTTCAAGCGCAATTAGACGCGGAAATACTAAAAGATATTGAGATGGAGGCTGCTATATCAAAAGTTTTCACAGCATCCAATAGCTATCAGAAATTCTTAGCGAAAGAATCGGAAGAATCTATTGACGAAGATCTTTATGATAATGATCTCATTATAGTTAAAAAGCCTGAAAACATAACAGTAATTACGGACTCTGATTCAGACAAAGCAAATGAGGAAGAGACTCAAGGTGtttcttataatattgaaaGAACACAATGTAAAGAAACAGATgatttaattactaatactattataaattctGATCCTGACTCTATATCCAAACTTGACGAAAAGGGTAACCATGAAGTTGAGATAGCAAGTTCGGTTTCTATAATTGAACTAAAAACTGAAAATGAAGATTGCTCTTATTTTAAAGAAGAGCCAGATTGTGATAGCGATTCTGAGGAGTCTGATTGGAATACATTATCTATATTTGGAAAGGAACTaacagaagaaattaaaatagaaacggGAGTTCCACATCTCGGCATAGATGATAATCCAACAATTAGTTTAGTGGAGAAAAATACACCACTTCCCCATGAGGGGATAAGCTTTGTAGATCTAAGATATAGTTCAGAGATATATTCCATAATCCAAAAAACATACAAGTGCAATAAGTGTCCGTACGAAGgttgctataaaaaatatgtagaacACGTAGCTACTAAATGCATTGTCAGGCGTATGAACTGTTCAACTTGTAACAAGGTATTTTGTAATCTAAAATTATATGTGAAGCATTTGAGGGAACACAGCTCGAAAAGTTTATCTTGTCCGGATTGCTGTCAAGAGTTCATTTCCATTACAACAATTTGCACTCATATAACCACTCATATAGTCGGtttgtttgatttattacaCAACTCGGTAGAAGATGCAATGTGTTATGCGTGTAAAAAGTGCAACAAGTGTTTCAATAAAGATCAATTTTTCAATCACTGGGAGTCCCATTTGTATGTGGGTGATGTTGAGGTGATAGAAGTAGGTGATAAGGTTACCATCAACAGTGTCAGTGTAAAGGATGAAGTTATGAGTCAGAATGTTATGGCACTTATCATAGAACAACTGCATTTTGATAAGATCAATAAAGAACATTTGAATTGTGTCGTTTGTTCAAAACAGTTTTCCAGGACAAACGAATACAAACGCCATCTCATAGAGCATCTGTTGATAGAAGCGTTGCGCAATAAAGTGAACACGAACAACCAACTGTGTTGCCAGATCTGCCAGACGAATATATCACAACTTACCGATTGGAAACAGCATATGCGAGCACACGCCTCCCTGCCAGGTTACAATTGCGATTTGTGCGAAAAAAAGTTTTCCGATTCAAGCAATTATACAAAGCATCGAAAAGTGCATAATTTGTTCTCTTACATTTGTGATTTGTGCGGGATCAAGTTTAGAGCTAAAACCAGCTTGGTGAGGCATTTGAAGCTTCACGAGCAAACACCATTGAAATGTccagaatgtaataaaatggcACACACCGAGtccaaattaaaattacatatatacaggaAACACAGACGTAACACGTATCCTTGTAAAATATGCAACAAGAGGTTCTTGTGTCTGAAGGATAAATGGGACCACATGTGGATTAAACACAAAGAGAGGAAAGCGAAGGCCGACTGTCCGTTCTGCAATAAGGCGTATAGGAGAAAAATTGATGTGAAGTCACACATAAAACTAGTGCACGGCACGAACAACAATTCCCCTGAACAACGCAGGCGACGCCGCAAACAGATCAATATCCGTGAAATGATCATTGTATCCCGTCATCCCCATTACCCTCCACAAGGGGGCACGCTCGCCTGCGTGAGTCTTACATCGTTTTAG
- Protein Sequence
- MNTHFKQKPRKSQLQLRDILEDEDENTFILQVTHPVKQHTLTVTSIRKGIEAQSIINTKPSDKYIDIAIRNFHGKFRKPLRLLHDQLIYKAIEQWKEWYEICPEIRDSPLLYKCYICNIGWWRLNPFREHIQEHDDFIVQSEPFHHEFFIVAGTTQSTEVRSVKVNSNCWKCGKPSKFHTVNDMMLKYICVGCNAIFVTCTKLKCHESICKHYIDLKCKELQMDQSDGIICNICTLYCESQNVLRDHLLEYHWPRPDEPVLIHLKRCKLCNSNYYIHKYHDCPKKSKTLKCNFCFRKFISKSFQYLHMVTNESYLPCVVCDKYHKQCALLEHMVQHSKNYAFVLWCCKCENNVLFTKYQIFRNHMMHYRRTVDRKRWSDKILLPVNCINGEVVTSQIILNIPEPEVDEFINGLEHFKNAFRRAIIQDPIKEDDVITIEDNVQQINQQLPKVDTRRVNIKDDPDRYALQAQLDAEILKDIEMEAAISKVFTASNSYQKFLAKESEESIDEDLYDNDLIIVKKPENITVITDSDSDKANEEETQGVSYNIERTQCKETDDLITNTIINSDPDSISKLDEKGNHEVEIASSVSIIELKTENEDCSYFKEEPDCDSDSEESDWNTLSIFGKELTEEIKIETGVPHLGIDDNPTISLVEKNTPLPHEGISFVDLRYSSEIYSIIQKTYKCNKCPYEGCYKKYVEHVATKCIVRRMNCSTCNKVFCNLKLYVKHLREHSSKSLSCPDCCQEFISITTICTHITTHIVGLFDLLHNSVEDAMCYACKKCNKCFNKDQFFNHWESHLYVGDVEVIEVGDKVTINSVSVKDEVMSQNVMALIIEQLHFDKINKEHLNCVVCSKQFSRTNEYKRHLIEHLLIEALRNKVNTNNQLCCQICQTNISQLTDWKQHMRAHASLPGYNCDLCEKKFSDSSNYTKHRKVHNLFSYICDLCGIKFRAKTSLVRHLKLHEQTPLKCPECNKMAHTESKLKLHIYRKHRRNTYPCKICNKRFLCLKDKWDHMWIKHKERKAKADCPFCNKAYRRKIDVKSHIKLVHGTNNNSPEQRRRRRKQINIREMIIVSRHPHYPPQGGTLACVSLTSF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -