Basic Information

Insect: Teinopalpus imperialis
Gene Symbol: -
Assembly: GCA_029286865.1
Location: JAGSMU010000046.1:2338274-2339236[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.2 1.3e+02 4.2 1.4 2 23 2 24 1 24 0.90

2 9 4.5 5e+02 2.3 0.0 3 23 53 74 51 74 0.87

3 9 1.7e-07 1.9e-05 25.7 0.4 1 23 122 145 122 145 0.95

4 9 3.4 3.7e+02 2.7 0.4 5 20 153 168 150 170 0.84

5 9 0.016 1.8 10.0 0.5 2 23 178 200 177 200 0.87

6 9 0.072 8 8.0 1.1 1 23 207 230 207 230 0.90

7 9 0.0011 0.12 13.7 0.7 1 23 235 257 235 257 0.96

8 9 4.9e-05 0.0055 17.9 0.4 1 20 263 282 263 285 0.94

9 9 0.0059 0.66 11.4 1.3 5 23 295 314 291 314 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.2	1.3e+02	4.2	1.4	2	23	2	24	1	24	0.90
2	9	4.5	5e+02	2.3	0.0	3	23	53	74	51	74	0.87
3	9	1.7e-07	1.9e-05	25.7	0.4	1	23	122	145	122	145	0.95
4	9	3.4	3.7e+02	2.7	0.4	5	20	153	168	150	170	0.84
5	9	0.016	1.8	10.0	0.5	2	23	178	200	177	200	0.87
6	9	0.072	8	8.0	1.1	1	23	207	230	207	230	0.90
7	9	0.0011	0.12	13.7	0.7	1	23	235	257	235	257	0.96
8	9	4.9e-05	0.0055	17.9	0.4	1	20	263	282	263	285	0.94
9	9	0.0059	0.66	11.4	1.3	5	23	295	314	291	314	0.89

Sequence Information

Coding Sequence: ATGGTATGCGTGTACTGCTGCGAAAGCTATGACGATCCCAAGGAGTACAGGACGCATCACGACGAGGAGCATTGCGACTTCCATGTGGACACTGCTTTTGCTCATATATTTAACAACTACGCCGAATATCTTAAGGTCGATTGCGTTGACCTTGCGTGTAGGTTGTGTCTGGAACGATTCGATACTCTCTACTCGATTGGCGAACATCTCTTAGGAGCACACTGTATAGACATAAATCTAGACGTTGAGATTGGAATGCAGATGTTTAAATTGGGCACAGAGAGATGGGTCTGCGCACTCTGTACGGTGAAGTTGCCATGTTTGAGGGCACTCAGTCGACACACCAGTTGCCACTACCACAAGTTCACCTGCGAGACCTGCGGGAAATCTTACGTGAATCGAGAGAATCTGACCCGTCACATTGCGTATGGCCATAGTGAATTCAAAATTTGTATTCGTTGTAAGAAGTCCTTTCCTAGTTGTCAGGCGAGGCGTGAGCACGTGTTAGCTTCTAAGAAATGTTGGCCATTAAGCTGCAGTACGTGCGGTCAGAGATTTGCTAGTAGAAAGTCCAAATTCGATCACCTCGTCGAGGTGCACGCGAAGCCGCCAAAGATCTATAATTGTCCGGAATGTTGCCAAGTGTTTGACAAATGGCGCATGTACCGCGCGCATTTCGTCGTAATGCACACAACTAACAACTACGCTTGTTCGTTTTGCGAGCAAAAGTTCGACAATAAGAGGAGTCTGTTAGACCATAGAGTGATCCATACCAAGGAGAAAGACTTCCCGTGTACAGTTTGCGCCAAATTATTTAGCAGAAAGAAGAATCTAGAGCAGCACATGTGGATCCACAGAGAACAGAAACGGTTCGAGTGTATAGCTTGCAAGAAACAATTCAATCAAAGAGTTAGCTGGAAGACACACATGAAATCTTATCATCCCGATTTAGTTAACTTTTAG
Protein Sequence: MVCVYCCESYDDPKEYRTHHDEEHCDFHVDTAFAHIFNNYAEYLKVDCVDLACRLCLERFDTLYSIGEHLLGAHCIDINLDVEIGMQMFKLGTERWVCALCTVKLPCLRALSRHTSCHYHKFTCETCGKSYVNRENLTRHIAYGHSEFKICIRCKKSFPSCQARREHVLASKKCWPLSCSTCGQRFASRKSKFDHLVEVHAKPPKIYNCPECCQVFDKWRMYRAHFVVMHTTNNYACSFCEQKFDNKRSLLDHRVIHTKEKDFPCTVCAKLFSRKKNLEQHMWIHREQKRFECIACKKQFNQRVSWKTHMKSYHPDLVNF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00958236;
90% Identity: -
80% Identity: -