Timp019712.1
Basic Information
- Insect
- Teinopalpus imperialis
- Gene Symbol
- -
- Assembly
- GCA_029286865.1
- Location
- JAGSMU010000038.1:1795520-1818788[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.62 69 5.0 0.4 1 23 330 352 330 352 0.96 2 10 0.00084 0.094 14.1 6.8 1 23 359 381 359 382 0.94 3 10 0.052 5.8 8.4 1.8 1 23 386 408 386 408 0.97 4 10 0.047 5.2 8.6 1.8 1 23 413 436 413 436 0.97 5 10 0.0049 0.55 11.6 0.3 1 23 440 463 440 463 0.94 6 10 0.014 1.6 10.2 0.8 3 21 477 495 476 500 0.93 7 10 1.1 1.2e+02 4.2 0.4 2 23 555 577 554 577 0.94 8 10 0.012 1.4 10.4 0.8 2 20 593 611 592 614 0.91 9 10 0.00048 0.053 14.8 0.2 1 23 620 642 620 642 0.97 10 10 2.5e-05 0.0028 18.9 2.6 1 20 649 668 649 670 0.96
Sequence Information
- Coding Sequence
- atgcgTTGCTGTGTTCCTAATTGTAAGAATGATTCTAGACATTTATCAAAATCCCAGGGAATTACGTTCCATGTCTTCCCTACAGACCAGTCACTCCGCATATCTTGGCTCAAAGCTCTCGGCAAGCAGTCTTGGGAGCCTAAAGATAGGAGCGCGGTATGTTCAGAGCACTTCCTCTGTGACGATCTATATGAAACCAAGAGTGGTTTGAGGAAGGTTAGGGCTGGTGCAGTACCTGGTGTGTCACAGGTTTGCCGAATATGTCTGGTGATGGACGGAAAACTGTTTAACATAAGGAAGTATAAACTGGACCAGGCTTTTGAGCATCTAACCGGGATAAACTTATGCGAAGAAGACAGTCTACCACAAAAGTTGTGCGCAGAATGTGCACACAGGCTGCTCTCGTGCCACCGGTTGAGAAGTAAAAGTCTCCGAGCGCATGCCCTCATGATGAAGATAGTCCGAAGACAGGATATGataacaataaaaagcaTACAGACAATAAACAGGGAAAGCAACAATCTAGGATCGAATCTAGTGCAAAGGCATTACGATCCAGATCACTACGACCTGTACCTACATCATAGGGAACAGACGCACGAGCATACAGACAAGAAGGAGACGGAGGAAACACACGAAACAATTGACgtggaaataaaaaatgaagacaACAACGAGATATATTTGAGCGAGAACGAAGCGGAATTGGAGGTTAAAGAAGAATTCATTAACTACACCTCAGACGACAGTGTACCTCTAGAGCGACGGAGAACTAAGAAGAAGAAAACCAAAGTGGTAAAGGCAACTGTAAAGAAAGTCAGGCAAATAAAGAAAGATCCCGCCGAACCCAAAGTCGATAGACGCAGGAAGCCATTTTTGAACGACGATCTAAACGAAACACTATTTACAATTACCGATCTAACTTATGACGAGCAAGTGGCTGAGATACTGAAGAGAAGGGAATCGGCCAATTACAAGAACTCCGTGTTCAAGTGTACTGCATGTTTCAAAGGGTTCCTGGACGAAGACGCGTATAATGGTCACATAACAAGGCATACTAACCAATGCGGTGAATACGAGTGCGAGATATGCAAGACTCATTTTAAGCATCCCCATGCATTGAGGAAACACGTGACCGCCCACCACACCCAGAGGTTCAGCTGCAACCAGTGTCCATATGTCACTACACATCGGCAGACGGCGAGACTTCACGAGAGGTGGCACAAGGGTACCAAATACCAGTGCCCGCACTGTCAGGACGAATTTGTTAAATTCACTACATATATGGGCCACATACGAATCAAGCATCCGTCGGACTTCGTGTGCGAATTGTGTGGTTATTCCTTCGTGAGCGAGAAAGGAATAGAGCTACACAAGAAATTGAAGCATCGCCTTGGGAGTGATAAGGTGCCAGAAGATGGACCGTTTTGCGATTTGTGCAACGTAAGGTTCATCACACAGGAAGCCTACCGGAAGCATCTTCACGTCTCGGCGAAGCACAATACTAGTGATAAAGAATCAAAAGAATCAAACAAACCCAAAAAGGATAGAAAGTCCAGAGAGATGAATGAAAGAGACAAGAGATCGAGGGACAGGAGCAGAGAGCCCAGTGAAAAGAGAAAGATATATCCCAGTCAGATGAGAAAGTTCGAGGGTCCCATACCTTGTGAGCAGTGCGGCTTGCAATTGGAAGACTCGAGGGCGTACCACGGACACTTTAGACGAATGCACCCGGACAAGAACAGAACCAACTATCCATCGATGAAGTCGCCGTGCATGTGCGAGTTGTGCGGCAGAATGTTCCAGAGCTACGCGCTGCTCAAGGACCACCGCTGGGTCCACACGGGCGAGAGGCCGTTCGCGTGCGAGGCCTGCGGGAAGGCGTTCCGCATGAGGCAGCGGCTGGTCGCCCACCGCCGTGTCCACGCGCAGCTGAAGGCCACCTACGTGTGCTCGCTGTGCGGGAAGCATTTCTCCACGCATAGCAACCGACAGAGGCATATGTTTGGACAGCTGCAACACCAGACGTCCTTGCCGACGAGTGCGAGCGAGATGGATACAGCGCAGCCTCTCTGGCCTTCGTGCGGACAGAAACTAAACGACGTCAATACCATAATGAACGACAAACCTATGTATTACAACAATATGAAGATATAG
- Protein Sequence
- MRCCVPNCKNDSRHLSKSQGITFHVFPTDQSLRISWLKALGKQSWEPKDRSAVCSEHFLCDDLYETKSGLRKVRAGAVPGVSQVCRICLVMDGKLFNIRKYKLDQAFEHLTGINLCEEDSLPQKLCAECAHRLLSCHRLRSKSLRAHALMMKIVRRQDMITIKSIQTINRESNNLGSNLVQRHYDPDHYDLYLHHREQTHEHTDKKETEETHETIDVEIKNEDNNEIYLSENEAELEVKEEFINYTSDDSVPLERRRTKKKKTKVVKATVKKVRQIKKDPAEPKVDRRRKPFLNDDLNETLFTITDLTYDEQVAEILKRRESANYKNSVFKCTACFKGFLDEDAYNGHITRHTNQCGEYECEICKTHFKHPHALRKHVTAHHTQRFSCNQCPYVTTHRQTARLHERWHKGTKYQCPHCQDEFVKFTTYMGHIRIKHPSDFVCELCGYSFVSEKGIELHKKLKHRLGSDKVPEDGPFCDLCNVRFITQEAYRKHLHVSAKHNTSDKESKESNKPKKDRKSREMNERDKRSRDRSREPSEKRKIYPSQMRKFEGPIPCEQCGLQLEDSRAYHGHFRRMHPDKNRTNYPSMKSPCMCELCGRMFQSYALLKDHRWVHTGERPFACEACGKAFRMRQRLVAHRRVHAQLKATYVCSLCGKHFSTHSNRQRHMFGQLQHQTSLPTSASEMDTAQPLWPSCGQKLNDVNTIMNDKPMYYNNMKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01402778;
- 90% Identity
- iTF_01402778;
- 80% Identity
- iTF_01402778;