Timp021172.1
Basic Information
- Insect
- Teinopalpus imperialis
- Gene Symbol
- -
- Assembly
- GCA_029286865.1
- Location
- JAGSMU010000046.1:2350860-2366486[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.25 28 6.3 0.1 3 23 250 271 249 271 0.94 2 13 0.0015 0.16 13.3 2.6 1 23 341 363 341 363 0.98 3 13 0.021 2.3 9.7 2.7 1 23 367 390 367 390 0.95 4 13 0.04 4.4 8.8 0.0 2 21 396 415 395 416 0.93 5 13 0.00046 0.051 14.9 0.1 1 23 423 446 423 446 0.97 6 13 0.087 9.6 7.7 0.0 2 23 476 498 475 498 0.91 7 13 1.1 1.2e+02 4.3 0.4 3 23 525 546 523 546 0.89 8 13 0.087 9.7 7.7 0.7 2 23 569 590 568 590 0.95 9 13 0.00011 0.012 16.9 0.1 1 23 594 617 594 617 0.97 10 13 1.2 1.3e+02 4.2 0.3 2 22 624 644 624 644 0.95 11 13 0.006 0.67 11.4 1.6 1 23 651 674 651 674 0.90 12 13 0.043 4.8 8.7 4.7 1 23 681 704 681 704 0.97 13 13 1.4e-05 0.0016 19.7 3.8 2 23 710 731 709 731 0.97
Sequence Information
- Coding Sequence
- atggcAGCGAAAACGTCGGATTGGCGACCGGGGCCTATACATACTGTATGTCGGTGTTGTCTCGTAGAAGGTTGTTACAAAGACATTTCTACTGAATATTTTTGGATGGGAAAGCGTGAAGTTTACGCTGAAATGCTTGCAATGACCTTCGGTTTAAGtATTGCATATTCACAATCGGATGGGCCCAACAGTAACACCCGCCTGATCTGTGAACCTTGCATATCCCGGTTGCGTGATGCTGCAGACTTCAAACGGCAGGTGGTTGAATGTGAGAAGACGTTCCTACAGCATCTGAACCCTAGCTGTTCCAGCACAGCTGATGCGGAAGTAACAACAGAGGAGCCCCAAGATGATggtaaagaggtgaaactggaATGTGTGAAGGTGGAGAAGCTGGGCAGCGATGATGAGTTTGATCAACCAAATTTCGATGATgaagacgatgatgatgatcTTGACAATCAACCCTTAACAAAATTGGCCAGCAAATTGCCAAAGAAGGAGTCAGTGGATATATCGGATTTGATAGATAACGCCAAAGTGGCGGAGAAGCGAAAGTCAACGGTGAAAGTTAAAGCCACGCCTGTGAAGAAACTCAAAATGAAGGAGACAAAAGCCACTGCAAGTAAAGCAAAGCCAGAGAAGAAAAAGAAAGACGACACGGACGATCCTGTGCGAAGTAACGCTGAGATGCTAATACGTTATACGACCGCCTATCCGTTCAGAGTGAACGACAAGTCTATATTGTGCGTCTACTGCTACGAATTGTTCGAAGATCCGGACGCGTTCCGCTTGCACCAAACTAATGAGCACAACAGTTCTACCATAAAAATCGCCTTCTATAATATTCCCAAACCAGAGTTCATTAGAGCCGACGTAGCGGATTTGCATTGTAGACTATGCCGCGAACAATTTGACGACCTAGACATCGCCTCACACCACTTAAAGACTGCACACGGCAAACCCATAAATAAGGACGTGAAACTTGGCCTCATGCCGTATAATTTGCAAAGAAACTCTTTCGTTTGTTACGTATGTAAGAAAGTGACGACGTCATTGTTCCATCTCGACCGACATACAATAACACACTACCTTACGTACGTTTGTCATGTGTGTGGAAAGTGCTATCTGGCAACCACTGGACTGCTGAGACACGTTAGGTCGAAACACCAGACGCACGAAGTGCCTTGCAATAGGTGCGGCGTGGTATTCCCCAATATGGAATTGAAGCAGCGCCATaggcgtgtggagaagagatgTATGCCTTATTCGTGTCCGAAGTGCGAGGAGCGTTTCATCGATTGGCAGGGTCGAATGAATCACATGGATACGGAACATGacGAGTGCGATCCCGTGAGGAGGAATGCGGAGATGCTCATAAAGTATACGTCCGCCAGTCCCTTCAGGGTGAACGTGAAGAATATAATGTGCGTGTACTGCGGGGACCTGTTCGAGGATCCGGACGAGTTCCGAGTCCACATGGTACAGGATCACGACACCTTCCGTGTGAATATGGCGTTCGCCAAATTGCCCAAAACGGAATACGTCAAAATAGACATCACAGATATGTGCTGCAGGATATGTCTGAAAGTATACAAAAATCTGCAAGCTATCGGTGTGCACTTGAAGGAAGCTCACGCCAAGGACGTTTCCATTGACTCACCTCTGGGCGTCATGCCGTACCTCCTAGACAAGGACAACTGGAACTGCGCGGTCTGCACAAAAAACCTACCGTCGTTGCTACATCTAAACAAGCACACCGTCACCCACTTCCTGAGTTTCGTGTGCGATATCTGCGGCAAGAGTTACATTGCCTCCACCGGCCTCCTGACTCACGTTAGATCCAAACACGAGAACGAATACAGGGCGTATTGTAAACGGTGCCAGGTGATATTTCCATCTATGAAAGCGAAGCAGATACACCAGAGAACGGACAAGCGTTGCATGACGCACTGCTGTCCCGAATGCCCGGAGAGGTTCCCGAGCTATGAATACAAGCAGAGGCATATGGTCGACGCTCACGGGATGACGAGGAAGGAATATACGTGCACGCGATGCCCGTTGAGTTTCAACCATCGTCAGGCGTTCTATGATCATTTCAAGAAATCCCATTCTGTGGATTGCGTCGTGTGTATGCATTGTGGACACAAGTTTGCTAGCGCGTCAAAACTAAATAGGCATATGAAAAAACACACTTCGTAA
- Protein Sequence
- MAAKTSDWRPGPIHTVCRCCLVEGCYKDISTEYFWMGKREVYAEMLAMTFGLSIAYSQSDGPNSNTRLICEPCISRLRDAADFKRQVVECEKTFLQHLNPSCSSTADAEVTTEEPQDDGKEVKLECVKVEKLGSDDEFDQPNFDDEDDDDDLDNQPLTKLASKLPKKESVDISDLIDNAKVAEKRKSTVKVKATPVKKLKMKETKATASKAKPEKKKKDDTDDPVRSNAEMLIRYTTAYPFRVNDKSILCVYCYELFEDPDAFRLHQTNEHNSSTIKIAFYNIPKPEFIRADVADLHCRLCREQFDDLDIASHHLKTAHGKPINKDVKLGLMPYNLQRNSFVCYVCKKVTTSLFHLDRHTITHYLTYVCHVCGKCYLATTGLLRHVRSKHQTHEVPCNRCGVVFPNMELKQRHRRVEKRCMPYSCPKCEERFIDWQGRMNHMDTEHDECDPVRRNAEMLIKYTSASPFRVNVKNIMCVYCGDLFEDPDEFRVHMVQDHDTFRVNMAFAKLPKTEYVKIDITDMCCRICLKVYKNLQAIGVHLKEAHAKDVSIDSPLGVMPYLLDKDNWNCAVCTKNLPSLLHLNKHTVTHFLSFVCDICGKSYIASTGLLTHVRSKHENEYRAYCKRCQVIFPSMKAKQIHQRTDKRCMTHCCPECPERFPSYEYKQRHMVDAHGMTRKEYTCTRCPLSFNHRQAFYDHFKKSHSVDCVVCMHCGHKFASASKLNRHMKKHTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -