Basic Information

Insect: Teinopalpus imperialis
Gene Symbol: -
Assembly: GCA_029286865.1
Location: JAGSMU010000035.1:7076950-7084952[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00052 0.058 14.7 0.6 1 23 296 319 296 319 0.95

2 12 0.0085 0.95 10.9 2.1 1 19 334 352 334 356 0.92

3 12 6.7e-05 0.0075 17.5 4.1 2 23 362 383 361 383 0.96

4 12 0.0038 0.42 12.0 2.1 1 23 387 410 387 410 0.94

5 12 0.27 31 6.1 1.6 2 23 414 435 413 435 0.96

6 12 4.8e-05 0.0053 18.0 0.2 2 23 511 532 510 532 0.95

7 12 0.2 22 6.6 0.2 2 23 552 574 551 574 0.95

8 12 1.4e-06 0.00016 22.8 4.2 1 23 580 602 580 602 0.98

9 12 0.00045 0.05 14.9 2.5 1 23 607 629 607 629 0.98

10 12 0.00027 0.03 15.6 1.0 2 23 636 658 635 658 0.95

11 12 3.1 3.4e+02 2.8 2.2 1 19 665 683 665 684 0.87

12 12 0.098 11 7.6 3.0 3 19 697 713 696 718 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00052	0.058	14.7	0.6	1	23	296	319	296	319	0.95
2	12	0.0085	0.95	10.9	2.1	1	19	334	352	334	356	0.92
3	12	6.7e-05	0.0075	17.5	4.1	2	23	362	383	361	383	0.96
4	12	0.0038	0.42	12.0	2.1	1	23	387	410	387	410	0.94
5	12	0.27	31	6.1	1.6	2	23	414	435	413	435	0.96
6	12	4.8e-05	0.0053	18.0	0.2	2	23	511	532	510	532	0.95
7	12	0.2	22	6.6	0.2	2	23	552	574	551	574	0.95
8	12	1.4e-06	0.00016	22.8	4.2	1	23	580	602	580	602	0.98
9	12	0.00045	0.05	14.9	2.5	1	23	607	629	607	629	0.98
10	12	0.00027	0.03	15.6	1.0	2	23	636	658	635	658	0.95
11	12	3.1	3.4e+02	2.8	2.2	1	19	665	683	665	684	0.87
12	12	0.098	11	7.6	3.0	3	19	697	713	696	718	0.89

Sequence Information

Coding Sequence: ATGGACGGATTCTCTTTGAACAACGAGTTACTATACCCGATACTGCTCATACCGAAGAAGTGCACAACACTAGAAATAACTTGCGAAGCAACCGACGACATCTTTATCGACCTCAGCATCACATCGGCCGATACTAGAGGTAACGAAATGTGCCTATACTCtggtttttgtaaaataaagctCATAGACAATTACGCTGTCGATATACGTGAAGTACAGTCCGCGACGACGTCAGATTCCAATGACATGGACGAGAAGGAAGTGGTTACAGATGCACCGAACCAATCTTACCCACCGTACAGTCAGTCGCATGTGTGGATAGATCCAGCACGGAGTCCATACGTTTACAACAATTACGATGCTTCTGGCCAACAGGGCAGATGCTCGGTACACCATCACTCCAGACAGATAACCGTCGAACAGCACAACACGTACATAACTCAAAATGTATTCAACTATCCGGAACCTGCAAATTTTTCGTCCGCTGAAGAGTTCGAGCATAAGAAGTTTAGAAAGGGCGCGGCCTGTGAAACGCAGTCAAACGCCGTCACTGAACCGAACATATATCAAGATGATGAGTTCGAATGCGGCGTGTTCTTATCACAGCTGGCTGAAGGGACAATGAACGAGAAGGAGGTCAGGTCACGTGAGGAAATGCGATACGTAGGACTGCACAGTGAGAATAACGCCTTGAAGCAACTCATGTCATCCGATATACAGCCGGTGTCGAAACAGCAGAAGACCATATTGTTTCTAGGTCACGACTCTCACTACGGGCAGACCATACaaaagatttctgtcaatgatcCATCTTGGGACTGTGTAACAGGTGAAATAGATCATGAAGTGGTTATTGATAACAACAATGAACACAACCAAAAGAAATATCAATGTgacaaatgtaaacaaatatttgaccAATTGGCCACGTTCAAGCAGCACATCGTGGTGACGCACAGGAACAGGGACCTGTACTCGCCGTCCTTGAGCGAAGTCAAGTTCATGTGTACAGAATGCGGTAAGAGTTTGAAGAGCCAAGAGAAGTTTGAGCTGCACTGCCTCGGCCACGGGGACCCGGAACTGGAATGTAACAAGTGCCACAAAGTATTCGCATCCAAATTCACCTTACGCACACACCGCAAACTACACATGAGACAGCATCCGTGCAAGTTCTGCGCTAAAACCTTTAACACACTAACGGATCTAGGGAGGCACACAGCCAAGACACATTTGGCACTCACCTGTGGTCGTTGCAGTTTCACAACGTTCAAATACGAAGAGCTGCTGATGCATCAGAGGAGACACACGTGCCCGCAGGAGAGCAGCGACACTGAGTCGTATTCGATTGATGACGGCATCGCGGACATTGCGAGCGACACCCCATCCAGGGAAAACTATTTGAGAAACAAAGATGATATCGAAAATTATGCAACTCAAGAGGAAATAAGAAAAGCTAACTCGGTTATCGCTAAAGTGATGTCAATAAAGTTTTTCTGCTCCACGCGAAGAAGAGTAAGAGACTCGGAAGATacttGTGACGTCTGCACAAAGTCCTTCGACCGAATTGGAGATCTGAAGAGGCATCTCATAGAGCACGTGATTAGAAGCACACTAGCGAAGAACCCGGTGAACAGAAACGGTACTCTGAACATGCAGTGTGAAGTCTGCCAAGCGGTAACATTCTCTAAGGTAGATAAATATAAGGCACATTTACGCGAACATGCGAAATTGACATTGTACCAATGCACATTCTGCAATAAATCTTTTAGCGACTCGAGCAATTTCTCGAAACACAAAAAAATCCACGGCACAACGTACTTTCAATGCGATCTTtgtcaaaggaaattcaactcGAAGAAAATGATTACTCAACATATGGAGTATCACAATAAAAACTCGCCAATACCTTGTCTTTATTGCGATAAAGAGTTTCATTTCGAGTCCATGTTAAATAAACACATCAAATATGTTCACACAAACGAAAATACTCGTTTTCGTTGTAGATTTTGTCACATGTATTTCAAAACTTTAAAAGAGAAGTGGGATCACGAATGGAACATTCATAACGTGAGGAAAATGATTGTCGATTGTCTCATTTGTAATTCTAAGTTCCGTAAATATTCTGAATTGAAGAGGCACTGTCTTGTTACTCATAATTTGGGAATTCCGCAAGCTAGAACGTTGCtaacaaaagataaataa
Protein Sequence: MDGFSLNNELLYPILLIPKKCTTLEITCEATDDIFIDLSITSADTRGNEMCLYSGFCKIKLIDNYAVDIREVQSATTSDSNDMDEKEVVTDAPNQSYPPYSQSHVWIDPARSPYVYNNYDASGQQGRCSVHHHSRQITVEQHNTYITQNVFNYPEPANFSSAEEFEHKKFRKGAACETQSNAVTEPNIYQDDEFECGVFLSQLAEGTMNEKEVRSREEMRYVGLHSENNALKQLMSSDIQPVSKQQKTILFLGHDSHYGQTIQKISVNDPSWDCVTGEIDHEVVIDNNNEHNQKKYQCDKCKQIFDQLATFKQHIVVTHRNRDLYSPSLSEVKFMCTECGKSLKSQEKFELHCLGHGDPELECNKCHKVFASKFTLRTHRKLHMRQHPCKFCAKTFNTLTDLGRHTAKTHLALTCGRCSFTTFKYEELLMHQRRHTCPQESSDTESYSIDDGIADIASDTPSRENYLRNKDDIENYATQEEIRKANSVIAKVMSIKFFCSTRRRVRDSEDTCDVCTKSFDRIGDLKRHLIEHVIRSTLAKNPVNRNGTLNMQCEVCQAVTFSKVDKYKAHLREHAKLTLYQCTFCNKSFSDSSNFSKHKKIHGTTYFQCDLCQRKFNSKKMITQHMEYHNKNSPIPCLYCDKEFHFESMLNKHIKYVHTNENTRFRCRFCHMYFKTLKEKWDHEWNIHNVRKMIVDCLICNSKFRKYSELKRHCLVTHNLGIPQARTLLTKDK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -