Timp019788.1
Basic Information
- Insect
- Teinopalpus imperialis
- Gene Symbol
- -
- Assembly
- GCA_029286865.1
- Location
- JAGSMU010000038.1:3333181-3351393[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0068 0.75 11.2 0.2 1 23 210 233 210 233 0.96 2 12 0.0068 0.75 11.2 0.2 1 23 406 429 406 429 0.96 3 12 0.00017 0.019 16.2 3.2 1 23 436 458 436 458 0.99 4 12 1.1 1.2e+02 4.3 0.5 1 23 462 485 462 485 0.88 5 12 0.00086 0.096 14.0 0.9 1 23 520 542 520 542 0.97 6 12 0.00029 0.032 15.5 2.0 2 22 553 573 553 577 0.92 7 12 0.00039 0.043 15.1 1.1 1 23 618 640 618 640 0.97 8 12 0.0021 0.23 12.8 0.4 2 22 649 669 648 673 0.90 9 12 3e-05 0.0033 18.6 0.4 1 23 681 704 681 704 0.91 10 12 0.045 5 8.6 5.0 1 23 710 733 710 733 0.94 11 12 0.00026 0.029 15.7 1.8 3 23 742 763 740 763 0.88 12 12 0.083 9.2 7.8 4.9 1 23 769 792 769 792 0.98
Sequence Information
- Coding Sequence
- ATGgaggtgaaagaaaatattttatgcattggTTGCCTCAGTGTTGGCCGTAAAATGTTGATACTTGAAGATTATTGGAAAAAGAAGTGTTTTCTACAAATTATCAGTGAAATAccgATGGTACATAGTGAGACAATACCAGAGTCTTTGTGCTGGGAGTGTGAAGCTGTTATAGCGCGTTTCACCAAGTTCAAACTACAAGTTGTACGATCATTTGAAATATTCCAGAACTATTTGAAACAGAATTTAGACTTGGCGcagttaaaaaaaaccacaaaacTATGTACACAGAAAGTGGTAGACATTGCAATACCAGATTTGACAGAACTgaaaatttcatatgtaaaaagTATAAAGACGGAGAAAGATTGGATTGAAGAAAGTCcagaaatcaaaataaaggaTGAAGACAACACCTCTGTCATTTCATATGCTGGCATAGATGATGATGAAGCATTAATAGAAATAACGAGAACAAAGAAGAGATCACGTAAAATATTGAACGGTACAACAAAGAAAAACCATAAATCTGAAACAGAAGTGTACAAAGAAATAGACCTGAGTGAATTAGAGTTAGGAGAAGAGAGAAGAGTGTTAGCAACTAAAGAAGATTATGTGAATGCTATGTTTAAATGTGACAGATGTATCGTTTCTTTCCCAAATGCAGATGATTTGAAGGACCATCTTAATTTGAAACACGAATTGATGGTACATAGTGAGACAATACCAGAGTCTTTGTGCTGGGAGTGTGAAGCTGTTATAGCGCGTTTCACCAAGTTCAAACTACAAGTTGTACGATCATTTGAAATATTCCAGAACTATTTGAAACAGAATTTAGACTTGGCGcagttaaaaaaaaccacaaaacTATGTACACAGAAAGTGGTAGACATTGCAATACCAGATTTGACAGAACTgaaaatttcatatgtaaaaagTATAAAGACGGAGAAAGATTGGATTGAAGAAAGTCcagaaatcaaaataaaggaTGAAGACAACACCTCTGTCATTTCATATGCTGGCATAGATGATGATGAAGCATTAATAGAAATAACGAGAACAAAGAAGAGATCACGTAAAATATTGAACGGTACAACAAAGAAAAACCATAAATCTGAAACAGAAGTGTACAAAGAAATAGACCTGAGTGAATTAGAGTTAGGAGAAGAGAGAAGAGTGTTAGCAACTAAAGAAGATTATGTGAATGCTATGTTTAAATGTGACAGATGTATCGTTTCTTTCCCAAATGCAGATGATTTGAAGGACCATCTTAATTTGAAACACGAATTGAATGCATCAAActacaaatgtaaaatatgtgaATGCTCGTTCGCTAGTGAGGTGTCATTCAACTACCATATGAACAGACACAAAAAGAGATTTCAATGTATTGTGTGTAGAGAGAACTTCCCCAATAAGAGGTCTATCAGTAAACACTATGGACTTATGCATTATCAGAGTGTAGATTACAATTTTGAACTGAAGGAAACATTGAATAGTGAAGTTGAAAACCAAGAGGTAACACAAGAGATCAGtacCGTAGAACCACCATCCTTTGCTTGTGAACTCTGCGCTAAAACCTTCAGATGGAAGACGTCTTTAAGAAAACATCTAGAGACGCATCGAATTGAAAATGGGCAGAAGAGGAAGCCTTATTGCGAGACTTGCAGGTTGTCGTTCACAACGACCTCTAACTTGCAGAAGCACGTCAAGACGAGTTCCAAGCATCAAATACAGTTGAAAGTGAGAAAACTGAAAGACACACCGTCGGAAGACACGAATAGCGCGGAGAAGCAGCACGATAGAATCGAGCAGATAAAGTGCTCCGTGAACAGGTCACGGGAAATGTTCCCATGCCCGCAATGCGATAAGAAGTTCCAATGGCGGGGGAATTTAGCGAGACACCTGCACAGCCACGCTGCGAGGGCCAAGGGTGACTTAGTGTGCGAGCCTTGCAACAGAACCTTCTCCTCGAAAGCCACCTACGAGCAACATATGAAGGTCAGCATGAAACACGTGTCAGAAAATGATTTCAAATACATGTGCAGTGATTGCGGTAAGAGATTCGCTAACAAGACCAGATTGAAGGACCACGTCGACTGGGACCACTTGAAGAACTACGTACACAGGTGTGCCTCATGTCAAAAGGTGTTCAAGAGTCACACTTCGCTGTATCTGCATAAGCAGAACGTTCACGAGAAGGATCAAGCGGGCCATCTCTGTCACCATTGCGGTAAAGCTTTCCCGaatCAAGCGAAACTTCGCGGACATGTGGCGGGGCTGCATTCACGCGAGGCTCCCTATCGCTGCAGCTCCTGCTCTGCCCGCTTCAGCTGGCACTCGTGCCTATCGCGCCATATACGCAGGGTGCACCGCAAACGTGACTCAGTACAGCACTAA
- Protein Sequence
- MEVKENILCIGCLSVGRKMLILEDYWKKKCFLQIISEIPMVHSETIPESLCWECEAVIARFTKFKLQVVRSFEIFQNYLKQNLDLAQLKKTTKLCTQKVVDIAIPDLTELKISYVKSIKTEKDWIEESPEIKIKDEDNTSVISYAGIDDDEALIEITRTKKRSRKILNGTTKKNHKSETEVYKEIDLSELELGEERRVLATKEDYVNAMFKCDRCIVSFPNADDLKDHLNLKHELMVHSETIPESLCWECEAVIARFTKFKLQVVRSFEIFQNYLKQNLDLAQLKKTTKLCTQKVVDIAIPDLTELKISYVKSIKTEKDWIEESPEIKIKDEDNTSVISYAGIDDDEALIEITRTKKRSRKILNGTTKKNHKSETEVYKEIDLSELELGEERRVLATKEDYVNAMFKCDRCIVSFPNADDLKDHLNLKHELNASNYKCKICECSFASEVSFNYHMNRHKKRFQCIVCRENFPNKRSISKHYGLMHYQSVDYNFELKETLNSEVENQEVTQEISTVEPPSFACELCAKTFRWKTSLRKHLETHRIENGQKRKPYCETCRLSFTTTSNLQKHVKTSSKHQIQLKVRKLKDTPSEDTNSAEKQHDRIEQIKCSVNRSREMFPCPQCDKKFQWRGNLARHLHSHAARAKGDLVCEPCNRTFSSKATYEQHMKVSMKHVSENDFKYMCSDCGKRFANKTRLKDHVDWDHLKNYVHRCASCQKVFKSHTSLYLHKQNVHEKDQAGHLCHHCGKAFPNQAKLRGHVAGLHSREAPYRCSSCSARFSWHSCLSRHIRRVHRKRDSVQH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -