Timp013447.1
Basic Information
- Insect
- Teinopalpus imperialis
- Gene Symbol
- -
- Assembly
- GCA_029286865.1
- Location
- JAGSMU010000022.1:1671962-1684961[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00036 0.04 15.2 0.2 2 23 140 161 139 161 0.93 2 10 0.00052 0.057 14.7 2.4 1 23 167 189 167 189 0.96 3 10 0.00012 0.014 16.7 0.6 1 23 281 303 281 303 0.98 4 10 0.0028 0.31 12.4 0.0 3 23 380 401 378 401 0.90 5 10 0.0023 0.25 12.7 0.3 1 23 416 438 416 438 0.93 6 10 8.4e-06 0.00094 20.3 0.2 1 23 468 490 468 490 0.98 7 10 0.00055 0.061 14.6 0.2 1 23 496 518 496 518 0.97 8 10 0.00031 0.035 15.4 0.3 1 23 524 546 524 547 0.95 9 10 0.015 1.6 10.2 1.2 1 23 560 582 560 582 0.96 10 10 0.0055 0.61 11.5 0.1 1 20 742 761 742 764 0.93
Sequence Information
- Coding Sequence
- atggAGCCATCGGGAGAAGACTTTAACCTCCATTGGGAGGAGGTTGTTATAAAGAACTCTACTAAGCATGAAAACCAAGTAATTTGTGGGCTTGATGGTGTACAGTCTGTATCATATACTACAATGACATCTGAAGAAATGATAGCGGACACTGATCAAATGGCAGCAGAAAATTTGATGTATCTGTCACAGGATGTAGTTGGTTATACCGAAACAACGGAATTGACTGATGATATGAACGTTGAATGTGTCACTGAAGAGGTCATCACTGATGATTGGGTCTTAGCTGGCGGTCAGGAAAGagtGGAAGTGCCTTTGGAGCAGTTCGCAAATACTGTGTCCGATATCaaaattgaaaatgatattGATGTTCCATTACCAACTGATCAAGATGAATACACGGCGATGCGGCCGTGGCCGTGCGACTTCTGCTCGCGTCGGTTCCGCAAGAAGGCCGCTCTGATGAACCACATGGTGGCCCACCAGAACGACCGGCCGCATGCATGCAACCTGTGCGGGGTCCGTTACGTGCGCAAGTGCGATCTCATGAACCATCTCAAGGTGCACGCCTATGTGCCCGACCACGCGGACGCGCTCGACTATGatgATGTTTTAGCAGATAACACTCAGTTGATAAAACCAAAGAAAAAGAGGGGGAGACGGAAAAAAAACCCTGAACCCGTTGAGaaCGGCGTGTGGGAGAACATGACGTCGGCCCGCACGCAGCAGTGGCAGCGGCGCGTGCGCACGCCCGCCCCGCGCTCGCCCACGCCCCCCTCGGAGCCGGAACCGCCGCCAGCTCCGCCCACTCCGCCGCCGCCCGCGGACCCCGCGCGACCTTTCGTCTGCCGCCACTGCGGTGTCGGCTTCGCGAGAGAGAAGGCGCTACAGTCACACTCCAGGATCCACGGCGGCGACTCGCCCGTGGAGTGCGCCGAATGCGGCGAGCTGTGCTGGTCGCGCGAGGCGCTGAGCTCGCACACCGCGCAGCGCCACCCGCACGCGCCTCCGCGCACGCACCGCGAGCCCTCCTACGACCGTTCCAACTCCGATGACGACATGGACTACTGCCTGTCGCCGGTGGCCGCGAGCGGCGACCGCGGCGTGTTCGACAACGTCCGCGGCCCCGAGCTCTTCTGCCAGGACTGCGGCGTCGCCTTCCAGCGCGTGGACCTGCTGCGACGTCACGTGGCCGCCGCACATAGcTATAAGAGGCACGACAGCACCAGCAGCACGTGGGCGGAGCACACGTGCGACGTGTGCGGGGAGACCTGCACGGACGCGCTGCAGCTGCTCGCACACGCCGAGGGGCACGCGGAGAGGCACCGCCCCCCCGCCACCAGGTTAAAAAGAATTGGTCGCGGTAGAAATAACACGACTTCATCGAGTGGTTCAAGACAGTTCCCGTGTAGAGAGTGTGGCAAGGTGTTCGGGTCGCGCAGCTCGCAGCAGATCCACATTAGGATCCACACGGGCGAGCGGCCCTACGCTTGTCGGTTCTGCTGGAAGGCCTTCGCCGACGGCGGCACGCTGCGCAAACACGAACGGATTCATACCGGCGAGAAGCCGTACGCGTGCGCGGTGTGCCCGCGCGCCTTCAACCAGCGTGTGGTGCTGCGCGAGCACGTGCGCTCGCACCACTCCGCGCCCGACCGCCGCGCCAACGGTGGGAACGCGTATTGCTGCGTGGTGTGCGGGCGGACGTTGCACTCCAGCGTGGAATTGGTGCAGCATTTAATACAGCACTGCGACGCGAACACCGCCTTGAAGAGACAACCGCAGagcGGTCCACGAAAATATAAGCGTCGACGTAAACTAAAAGCCGAGCTAATATCCCCGAAGCGCGAATGGGAGGAGCCGGAGCGCGCGTCGTCACCGTCGGGCGCGTCGGCCGCATCCCACACGTCGCCCCCCCACGGCAACGCTTCGCCCATACGTCGCAATACATCCCCCCCACGGCGCAATGTGTCGCCCCCACGTCGCAATAGTTCGCCCCCGCGCCGCCGACGACGTCGGGCACAGCCCGCCCCGCCTAGGCCTCGCATGATACATACTGAAGAGCCTCGACCGAGGACCAAGCAGGTGCGCACCCGCCGTCCGCCCCGCCATCCAGCGGACGACTTGCTCGCAATCGGACATCGCTCCCCGTCCCCCGGGCCGGCATCTCCATCCCCCCCCTCTCAACAGTCGCCACCGTCCTCCCCCCACCTGCCGGTCGGGCCATACAAGTGCGAAATGTGCTCGCTGGAGTTCCCGCGGCGCGACGCCCTACTGCTGCACGTGCCCGTTCACATCTGA
- Protein Sequence
- MEPSGEDFNLHWEEVVIKNSTKHENQVICGLDGVQSVSYTTMTSEEMIADTDQMAAENLMYLSQDVVGYTETTELTDDMNVECVTEEVITDDWVLAGGQERVEVPLEQFANTVSDIKIENDIDVPLPTDQDEYTAMRPWPCDFCSRRFRKKAALMNHMVAHQNDRPHACNLCGVRYVRKCDLMNHLKVHAYVPDHADALDYDDVLADNTQLIKPKKKRGRRKKNPEPVENGVWENMTSARTQQWQRRVRTPAPRSPTPPSEPEPPPAPPTPPPPADPARPFVCRHCGVGFAREKALQSHSRIHGGDSPVECAECGELCWSREALSSHTAQRHPHAPPRTHREPSYDRSNSDDDMDYCLSPVAASGDRGVFDNVRGPELFCQDCGVAFQRVDLLRRHVAAAHSYKRHDSTSSTWAEHTCDVCGETCTDALQLLAHAEGHAERHRPPATRLKRIGRGRNNTTSSSGSRQFPCRECGKVFGSRSSQQIHIRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHVRSHHSAPDRRANGGNAYCCVVCGRTLHSSVELVQHLIQHCDANTALKRQPQSGPRKYKRRRKLKAELISPKREWEEPERASSPSGASAASHTSPPHGNASPIRRNTSPPRRNVSPPRRNSSPPRRRRRRAQPAPPRPRMIHTEEPRPRTKQVRTRRPPRHPADDLLAIGHRSPSPGPASPSPPSQQSPPSSPHLPVGPYKCEMCSLEFPRRDALLLHVPVHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00958137;
- 90% Identity
- -
- 80% Identity
- -