Timp017783.1
Basic Information
- Insect
- Teinopalpus imperialis
- Gene Symbol
- -
- Assembly
- GCA_029286865.1
- Location
- JAGSMU010000031.1:2093911-2097070[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0094 1 10.8 5.5 1 23 141 164 141 164 0.97 2 18 4.1e-05 0.0045 18.2 2.4 1 23 173 196 173 196 0.97 3 18 0.026 2.9 9.4 0.7 2 23 209 231 209 231 0.97 4 18 0.00058 0.065 14.6 1.2 1 23 240 263 240 263 0.95 5 18 4.5e-05 0.005 18.1 1.4 1 23 275 298 275 298 0.96 6 18 0.00035 0.039 15.2 1.0 2 23 328 350 327 350 0.96 7 18 0.00034 0.038 15.3 1.3 2 23 360 382 359 382 0.96 8 18 0.055 6.1 8.4 0.7 3 19 388 404 387 407 0.93 9 18 0.00016 0.018 16.3 0.1 2 23 412 434 411 434 0.96 10 18 0.31 34 6.0 2.2 3 23 444 465 443 465 0.93 11 18 0.00095 0.11 13.9 3.3 1 23 470 493 470 493 0.93 12 18 3e-05 0.0034 18.6 2.6 2 23 504 526 503 526 0.97 13 18 0.00056 0.063 14.6 1.3 1 23 552 575 552 576 0.94 14 18 5 5.6e+02 2.2 1.1 2 23 582 603 581 603 0.75 15 18 0.21 24 6.5 1.1 2 23 610 631 609 631 0.96 16 18 4.1 4.6e+02 2.4 0.8 2 23 669 690 668 690 0.91 17 18 0.0058 0.64 11.4 0.1 1 23 697 719 697 719 0.97 18 18 0.16 18 6.9 2.0 1 23 725 748 725 748 0.96
Sequence Information
- Coding Sequence
- atgtcATATCAAGATGGTGTAGAAGATTTAACCATAAAAAGAAAGGACCCAACATCTTTCTTGCCAGAAGAGCCTATGTCatatgaaataaaagcaaaaaagaagaagaaaaaaaagaaacatagacAAGAAGATCCATTTAAGGATATAGAAGAAAAGACTGCACTATCAACAGAAATAGCACTTGATCCAGAGGTGAACATTAAAGTTGAGAATATTGAAGTAGAGTTGGATTTTAATGATTTCACAAATGACAATGGGCTAATGGTGGAAGGTCCTCAAAGCGAGGATAGTCAAGAGCCTGTCGTTAAACTAGAGCAACAGAATCGAGAAGCGGTAATTTTAACATTCGAGAGCGTAGTGAGTGATAAAACAGTTTTCGGTTATAGCCAAAGTGGTACTGGTCCTATAGAGCCGGTGCACGTGTGTAAAGTGTGCCATCTTGTTTTTCAATCCATTAAAACGCTAAAAACGCACCAGAAGAGAAAACACAAAGTGTTCAGAAGGTCGTTTAAACACACCTGTGATCATTGTGGAATGGCCTACGAACAGAAGACGAGCCTAATCGCACACATCAAGAGGAAACACGGACCGAACGCCATGCCCGATGACAGAGAAGAAAGGACTTGTGAAGTTTGCGCTCTAGTGTTCAAAGGCATGACGAGGTTAAGGATGCATATGCGAAGAAAACACGGTTCTTTTGAAGATTCCTTCAGACACGCGTGTAAAGATTGCGGGCTTACATACGACAAGTATAGGAGTTTAATTGTTCACATCCAAAGAAAGCATACAGCAGAAAAGAAACCCATCGTGAACCAATGGTTCAACTGTCCATTTTGTCCAAAAGTCTTCACTAAACGTGAGACTTACGCCAGACACGTGCAAAGAAAGCATCGGGTCAGCGAcgaagataatataaaacaggAAAACTTAGATCAGGATTTATTAGAAAGTTGTAAAAATGAAGAAACCGGTGAAATATCGTGTAGGGAATGTCCGTTGatgttttcttctttaaatttcttaaaattacaCATGAGACGGAAGCATAATGCGCTAAAGGAAGATTTTAGGCTCAAATGTAGAATATGTAACTTATCCTATGATAAGATTGAAAGCTTAAAGAGGCATATCAGAAGGAAACACGACAAGGGATCGTTCTGTGAAGTGTGCAATAAACAATTCGATACTAGagagttatatttaaatcattcacATGTCAAAATGATCAAGGAATGCTCAATTTGCGGATTAATTTTCGCGTCCCAAGGGGGCTTGGGGAAACATTTGCGCTCTACACACAAAATAGACACGCCCAAAACTGTATTTTGCAACCTGTGCAACGAAGGGTTCCACGATAAAAGGCAGTTAAAGCCTCACTTTATGAAAGTGCATTTAAAAGTGTCATATACTTGCCGTTATTGCAAGAAAGCTTTCAAAGCGAAGGAGAGTTATAGACGTCACGTTTTATTCAAACACCCTGTGAACAATGAAAGTAGTCAATCGCAAAAGTGCGAACATTGTACACGGACGTTTCCAGACGAAGTGGAATTGTGTCGACATATCAATACGGCACATGGAAAACCACTAGAGGGAGTTCAAAACAAAGAAgtagttatagttaaaaaaGAGGAAATAGATTTTAAAGAATCTTTCCAATGCTCAAAATGTCCTGAGTCCTATCAATCTTGGGAGGAACTCCGCTTGCACTACGAACAAAATCACCACACAATCGAAGATACACAGTGTCAGATTTGTGGGGAGATAATGCCGGGGAACGAGCTTCAAAAGCACATAAAAGTCGCTCACGCAGAGGAGGCTGTACTAGAATGCAAATACTGTGAATTCAAAACGTCAATACGAGCGAGCATGACCCAGCATACACTAAGACACAAAAACGCAACCACATTAAACTGCGACATAGACGGTTGCAGATACAAGACTTTTTACGAGGGTGCGATGGTGAAACACAAAAAGAAACACACGGAGCAGGGGGTGAAATTGCAGTGTACGCAATGCTCGTTCCAAACGATGAATAAATACGTCCTAAAGTACCACGAGGAGGCGCATATGACCGGCAAGAAAAAGTACGTTTGCGACCAATGTGATTACGCGACAATTTTGCCGGCGAATTTAGTACAGCACAGGTACAAGCATTCCTCGGAGAAGAGGTTCAAATGTGAGGTTTGTCCGTTTGCAACAAAGTACAACACGTCCTTACGATTCCATGTGAAGAAGAAACATTGTGATCTCCCTTCGTTCagttaa
- Protein Sequence
- MSYQDGVEDLTIKRKDPTSFLPEEPMSYEIKAKKKKKKKKHRQEDPFKDIEEKTALSTEIALDPEVNIKVENIEVELDFNDFTNDNGLMVEGPQSEDSQEPVVKLEQQNREAVILTFESVVSDKTVFGYSQSGTGPIEPVHVCKVCHLVFQSIKTLKTHQKRKHKVFRRSFKHTCDHCGMAYEQKTSLIAHIKRKHGPNAMPDDREERTCEVCALVFKGMTRLRMHMRRKHGSFEDSFRHACKDCGLTYDKYRSLIVHIQRKHTAEKKPIVNQWFNCPFCPKVFTKRETYARHVQRKHRVSDEDNIKQENLDQDLLESCKNEETGEISCRECPLMFSSLNFLKLHMRRKHNALKEDFRLKCRICNLSYDKIESLKRHIRRKHDKGSFCEVCNKQFDTRELYLNHSHVKMIKECSICGLIFASQGGLGKHLRSTHKIDTPKTVFCNLCNEGFHDKRQLKPHFMKVHLKVSYTCRYCKKAFKAKESYRRHVLFKHPVNNESSQSQKCEHCTRTFPDEVELCRHINTAHGKPLEGVQNKEVVIVKKEEIDFKESFQCSKCPESYQSWEELRLHYEQNHHTIEDTQCQICGEIMPGNELQKHIKVAHAEEAVLECKYCEFKTSIRASMTQHTLRHKNATTLNCDIDGCRYKTFYEGAMVKHKKKHTEQGVKLQCTQCSFQTMNKYVLKYHEEAHMTGKKKYVCDQCDYATILPANLVQHRYKHSSEKRFKCEVCPFATKYNTSLRFHVKKKHCDLPSFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01154433;
- 90% Identity
- -
- 80% Identity
- -