Timp021035.1
Basic Information
- Insect
- Teinopalpus imperialis
- Gene Symbol
- -
- Assembly
- GCA_029286865.1
- Location
- JAGSMU010000046.1:1122588-1124450[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0037 0.41 12.0 0.3 1 23 44 66 44 66 0.97 2 16 0.023 2.6 9.5 0.1 2 23 94 116 93 116 0.95 3 16 0.003 0.34 12.3 2.0 2 23 137 159 136 159 0.95 4 16 0.044 4.9 8.6 0.3 1 23 164 187 164 187 0.93 5 16 0.0024 0.26 12.6 0.3 1 23 191 214 191 214 0.91 6 16 0.0074 0.82 11.1 2.5 3 23 218 239 217 239 0.97 7 16 3.2 3.5e+02 2.8 2.0 2 22 245 265 244 268 0.88 8 16 0.00017 0.019 16.2 1.6 1 23 316 339 316 339 0.94 9 16 0.0036 0.4 12.1 0.3 2 23 367 389 366 389 0.96 10 16 0.008 0.89 11.0 0.1 1 23 411 434 411 434 0.93 11 16 9.5e-06 0.0011 20.2 2.0 3 23 441 462 440 462 0.96 12 16 0.2 22 6.6 0.1 1 23 467 490 467 490 0.94 13 16 0.00021 0.024 15.9 3.8 2 23 496 518 495 518 0.94 14 16 5.3e-05 0.0059 17.8 3.5 1 23 522 545 522 545 0.97 15 16 0.0056 0.63 11.5 0.6 2 23 552 573 551 573 0.97 16 16 0.0093 1 10.8 1.4 1 23 579 601 579 601 0.96
Sequence Information
- Coding Sequence
- ATGTTAGAAAATTTCTTTCCAGATAAAACGGGACGAGTAAAGACGCCCAGTGCCAATAAACTGAGAAGGAGAAACCTTCAGATTCTGTTCAACAACACATCGTTGATACCGTTTAAATGGCGAGGAAAGTACATGTGTTTTTACTGTGGCGAGGATTTGCCGGTATACAGTCTTCTGAGGAAACACACGAAAGCGCACGGCCCCTGTTCCGATGCAGATCGCGCTATGAGACTTGTTAAATCGGCCGATTCCGAAGTTAAAATCGATGTATCGAACATAACATGCGAACTATGCGAAGAAACATTCGACAATTTCGACGACATAGTCAATCATCTATCATCAGAACATAGACTGCTCTATGATAAATGTGTTCGTTTAGATCTAACCACGTATAGACTGGAAGATCTTAAATGTCTACACTGTGACAAACAATTCaattacttcaataaattaataattcacgTTAACAGTGATCATGCAAGTGGATGTTATCTGTGTAACGAATGCGATCAatggtttaataaaaaacgcGATATGGAAGCGCATGCGCGTGCGCGTCACAGGAAGCACTATCGCTGTGTAAAATGCTCTCTCACATTTCAATCCAATGTGGATTTACAAAATCATAAAGCGGCCGCACATACATCCGCGTGTAACATTTGCTTCAGACATTTTTCATCCGCGAACAAGAGGTTAAAACATATGAAGGTGGATCACGCCACGGACGGACTGCAATGCGGATTCTGTCTTAAGAGTATGACCACAAAGCAGGGTTTTCTACGGCATGCGGCCACCTGTACTCACCATGGCGACGGTTTAAAACTATCCAATTCTGTTATAGACAATGATAAAGAACAGAAACCTTCAGTTAAACGTATCAGAAACGATTTAGCCTGTATCATAAATATGTCAACCGCTATTCCTTTCAAGCATTACTTGAGTAGATTTAGGTGTTTCTATTGTCCCAAAGACTTCATAGATTGCGATGATCTCAAACAGCACACCGTTGTGGAGCATCCACTATGTGATATCAAATTAAAGTCtatgaaattacgtaatagGGAAGAGGGTCGTATTAAAATTGACACATCATCTCTATCTTGCAATGTTTGTCATGAATCCATATCTgaattagataatttaataagtcATCTTACCACAGAACATAAAGCAAACCTAGACAAATCTATTGAATGCCATTTGCAGCCGTTTAAATTGATCAAGGAAAACTTCGCTTGTCCCATCTGCGGGGAGGTCTATAGATATTTCACGATACTGTTAAAGCACCTAAGCGTATCTCATAcggataataaaaacatatgctCGTTCTGCGGCAAAAGCTTTAGGTCGCACCCAAATCTCCGAGCTCATATATCTCGACGACACAAAGCAGCTGCATTCAGATGCGGTCTTTGTAGCTCAGAGTTTATCGCCAACAATCAGCTCCTAGCGCACCTGGGCAAGGTGCACGGCACGAAGGCGGTGGAGTGTCCCGAGTGCAAGGAGAGATTCACAACACGTTACTGCATGCAAAGGCACATGATACACTCCCACAAATCGGGACACAAATGTACTTATTGTGGCAAATTGTTCATTAGGAACTCGTTCATGGTCAATCATATCAGACGGACGCATTTCAAAGAGAGAAACGTCGAATGCTCCCTGTGCCGCGAGAGATTTTTCGATGCCCAACGTCTCAAAATGCACATGATAAAGCATTACGGGGAGCGTAATTATCATTGTGACGTTTGCGGAAAGAAATTTCTCTGGAAGAAAAATCTCAGGGGCCACATGGCATCGCACATTAAAAACACCGACAGCCAAGCGAGAGTTTACGACGCAATGAATAGTGATATAAAGTAA
- Protein Sequence
- MLENFFPDKTGRVKTPSANKLRRRNLQILFNNTSLIPFKWRGKYMCFYCGEDLPVYSLLRKHTKAHGPCSDADRAMRLVKSADSEVKIDVSNITCELCEETFDNFDDIVNHLSSEHRLLYDKCVRLDLTTYRLEDLKCLHCDKQFNYFNKLIIHVNSDHASGCYLCNECDQWFNKKRDMEAHARARHRKHYRCVKCSLTFQSNVDLQNHKAAAHTSACNICFRHFSSANKRLKHMKVDHATDGLQCGFCLKSMTTKQGFLRHAATCTHHGDGLKLSNSVIDNDKEQKPSVKRIRNDLACIINMSTAIPFKHYLSRFRCFYCPKDFIDCDDLKQHTVVEHPLCDIKLKSMKLRNREEGRIKIDTSSLSCNVCHESISELDNLISHLTTEHKANLDKSIECHLQPFKLIKENFACPICGEVYRYFTILLKHLSVSHTDNKNICSFCGKSFRSHPNLRAHISRRHKAAAFRCGLCSSEFIANNQLLAHLGKVHGTKAVECPECKERFTTRYCMQRHMIHSHKSGHKCTYCGKLFIRNSFMVNHIRRTHFKERNVECSLCRERFFDAQRLKMHMIKHYGERNYHCDVCGKKFLWKKNLRGHMASHIKNTDSQARVYDAMNSDIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -