Timp000459.2
Basic Information
- Insect
- Teinopalpus imperialis
- Gene Symbol
- -
- Assembly
- GCA_029286865.1
- Location
- JAGSMU010000001.1:10431040-10450679[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.36 40 5.8 2.2 6 20 12 26 7 28 0.87 2 12 0.093 10 7.6 0.3 1 12 211 222 211 231 0.90 3 12 7.8 8.7e+02 1.6 0.4 1 19 353 371 353 371 0.96 4 12 2.6e-05 0.0029 18.8 0.0 1 23 378 400 378 400 0.98 5 12 2.6e-05 0.0029 18.8 1.5 1 23 413 435 413 435 0.98 6 12 6e-05 0.0067 17.7 2.7 3 23 489 509 487 509 0.96 7 12 0.00056 0.062 14.6 2.6 1 23 525 547 525 547 0.98 8 12 1.1e-06 0.00012 23.1 3.7 1 23 553 575 553 575 0.98 9 12 0.00044 0.049 14.9 5.2 1 23 581 603 581 603 0.97 10 12 1.6e-06 0.00018 22.6 0.4 1 23 609 631 609 631 0.98 11 12 0.0016 0.17 13.2 0.2 1 23 635 657 635 657 0.97 12 12 4e-05 0.0044 18.2 0.2 1 23 665 688 665 688 0.98
Sequence Information
- Coding Sequence
- ATGGGAGACGTAATGATAAATTGTCCTTTATGTTGTAAAGAAACTTTTAGTTCTAAGCACAAACTTATGGAACATTTAACGAAtgtattatcaaatttaatttgtcCTATTTGTAAAGATAAATGGTCCACTGTAGTGCATCTTGTAGAACATTTAACCCTAGATAATTGTCAGCAAACTGCCTCTCCCCAAGGTATTATTTATAAGGATGAAACagctacaaaaaatattgaaagtggCAGAGAACATACAGACTTAGAAGAACTTGATTTACTATCTAAGCaAAATGTACAGAAGGAAGTTTCAGAAGGTCAATTATCTAATAGTACTGCCAGTCTACTTAAAAGTAAAGAAGGTAAACAAGGAAATAAGATGTATGTTGAATTATTCAGTGAACAATTATTGAAGCCATGTCACCAAACACAAGAGTTGAACCTTATAAAAGAAAGCACTGATAGATATATGATACTGACTGATGATGATTCTATATTGAACACTGGTAGCACtgtagtaaaacaaaataatgatggaACTATATCTATGACCGTTAGAGAACCAAAATTAGAAGTTGTGATTGACTGTCCCTCAAATTCAACAGCAAATGAACCAGAGGAAACCAATGTAGAAATATACACATGTAATACATGTGGAGTTTCTTTTACTTCTGTTATAGACCATATACAAAACTATCACAATGATCAAGAAGTGGTTGTGGAGggtgaaaatGAAACTATAGACACTGAGGAGTTACCTAGCAGTGATAAACAAACATCTCGGCGCATGATTACTGACACTGGTGATATTGTTGAAGCACCTGTGATACTACAAGCAAGTGGTGAGGTCCGTCAGCAATTGTTTGAACAATCTATAATCATACCATTGAATGACAGTGAGGATAAAAATGACATAAAAGAACCTACAAAACATTTAGtacaaatagaaaaatttaGTAATAGTCTGATAAAGGATATCAAagaacctgatgATAAAAATGGTCCATATCATAAAGTTGTGGTAAAAGAAATGGAAACAAGTATTggcaacaaaataaaagtttataattgtaTGTCATGCAATATTTTTGTCTCTTCTTTGACCGAATTCAAGACTCACCCTTGTAAAGCATTGAAATACCCTTGTTCATATTGTCCAGTGGCTTATGAGAATCCCAAATCTCTCAGTGCACATATGAAAGTACATAAATCAGAAGaagtAAACTTCGGTCCGGATGTCTCGTTTGAATGCATGATTTGTTCAACTGTCTTCTCatcaaataaatcattaaaactaCACAAGCGGATGCATGATCCAATTAAGTCTCGTCCAATCGAGCCTCCAGTGGAGACAACTGAAGGCAATGCCGTCAGCGATGACAAATTTATATGTCCCATATGTTTCAAACTGATACCAGAGGACTACCGCACTATACACCAGAACTCGCATGTCAACAGCAACAAAATGAATTGTGAAATTTGCAACAAGAAGTTCCATTCGAAGGAGTATCTCAAGATGCATATGAGTGTACATAATATTGATaaggtAATAATTGGAAAACAAGATAAATCTCTACCGTACACgtgtttatattgtaatagaaaGTTTGCAAGACCACATGAAAAAGTCAAACACGAAAGAATACATACAGGTGAGAAGCCCCATACATGTGAAATATGCGGCAAAGCGTTCCGCGTATCGTACTGTCTAACACTTCACATGCGCACGCATACGGGCGCACGTCCTTACGCCTGTCCGCACTGCGGTAAAcgATTCAAGGCACACAGTGTATACAATCATCACCTTCTCACACACTCCGAGGTACGCGCGTATAAATGTCCGTATTGTCCCAAAGCTTTCAAAACTTCCGTACAACTAGCCGGACATAAAAATTCGCACACGAAACCTTTCTCCTGCCAGCAGTGTAACAGACCGTTTGCATCACTGTACGCGGTGCGAGTCCACACGGAGATCCACTCGCGACAGAATAGTCTTAAGTTTTCCTGCTCCTTATGCGGTGCGAGCTATGCGCGAGCGTTTGCACTCAAGGACCATATCAAGACAACACATAAAGTTGCAATTGAAAATATGAAAGATCTCAAGGACGACGATTGGTCGTTGCGTGTAGCCGATGGCGATGGCGAAGGCGATGGGAGTGGTGAGGGCGACGACGAGATAATAGAAATTAATGGCCTCAACAAAGATATACCGCAAGAGGTTAGAGATGACTATTATTTACTGTAG
- Protein Sequence
- MGDVMINCPLCCKETFSSKHKLMEHLTNVLSNLICPICKDKWSTVVHLVEHLTLDNCQQTASPQGIIYKDETATKNIESGREHTDLEELDLLSKQNVQKEVSEGQLSNSTASLLKSKEGKQGNKMYVELFSEQLLKPCHQTQELNLIKESTDRYMILTDDDSILNTGSTVVKQNNDGTISMTVREPKLEVVIDCPSNSTANEPEETNVEIYTCNTCGVSFTSVIDHIQNYHNDQEVVVEGENETIDTEELPSSDKQTSRRMITDTGDIVEAPVILQASGEVRQQLFEQSIIIPLNDSEDKNDIKEPTKHLVQIEKFSNSLIKDIKEPDDKNGPYHKVVVKEMETSIGNKIKVYNCMSCNIFVSSLTEFKTHPCKALKYPCSYCPVAYENPKSLSAHMKVHKSEEVNFGPDVSFECMICSTVFSSNKSLKLHKRMHDPIKSRPIEPPVETTEGNAVSDDKFICPICFKLIPEDYRTIHQNSHVNSNKMNCEICNKKFHSKEYLKMHMSVHNIDKVIIGKQDKSLPYTCLYCNRKFARPHEKVKHERIHTGEKPHTCEICGKAFRVSYCLTLHMRTHTGARPYACPHCGKRFKAHSVYNHHLLTHSEVRAYKCPYCPKAFKTSVQLAGHKNSHTKPFSCQQCNRPFASLYAVRVHTEIHSRQNSLKFSCSLCGASYARAFALKDHIKTTHKVAIENMKDLKDDDWSLRVADGDGEGDGSGEGDDEIIEINGLNKDIPQEVRDDYYLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -