Timp017773.1
Basic Information
- Insect
- Teinopalpus imperialis
- Gene Symbol
- -
- Assembly
- GCA_029286865.1
- Location
- JAGSMU010000031.1:1524069-1554196[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.8 2e+02 3.6 1.3 1 23 530 552 530 552 0.94 2 11 0.00021 0.024 15.9 2.9 1 23 564 586 564 586 0.97 3 11 0.00016 0.018 16.3 4.1 1 23 592 614 592 614 0.99 4 11 1.2e-05 0.0013 19.9 2.2 1 23 621 643 621 643 0.99 5 11 1.7e-05 0.0019 19.4 0.2 1 23 649 671 649 671 0.93 6 11 6.3e-05 0.007 17.6 0.0 1 23 677 699 677 699 0.98 7 11 2.5e-06 0.00028 22.0 1.1 1 23 705 728 705 728 0.95 8 11 0.00031 0.034 15.4 1.9 1 23 734 757 734 757 0.95 9 11 0.00016 0.018 16.3 0.8 2 23 764 785 763 785 0.97 10 11 1.5e-06 0.00017 22.7 0.3 1 23 791 813 791 813 0.97 11 11 0.0067 0.75 11.2 0.1 1 22 819 840 819 840 0.97
Sequence Information
- Coding Sequence
- ATGAACCAATACTGCTTCGTCTGCAACACACGAGCTGGTATTTCTCTAcgtaatgcaataaatatattcggAGAAAATaCGACCCTGCAATCGGGAAAGGATCTAGTCGAAGTATTGGGTGAAATCGTCGAGAGACCCGTCAAGGAAGATGGTATACATTCGAAAATCCTCTGCAAGAGATGCCACAAAATATGTACAGAGTATGACTCTATACAAGTCAGGTTAAGAGTGATAAAGACAGACTTGCTTGGCCAGTTCAAAAGGACGTTACCTAGACACAATTTAAACTATGATACGTACAATAAAGACGCCGACAAAACTATCCTCCCACCGCCTGCCAAGAAGTTTGAAGGCAAGAAGATAATACTGCCAGCTTCCAAGTTACAACCGTTGCCGCCCAATTTTGTGATAAAGTCAGGGAAATGGTCTAATGGGAAACCCCCGATCGGTATAGGGGCCAAGCTGAATAACcCCGATATAAGAATACTGTCACCGTCAACTTTAAATCTTAAAGTGACGGTCGGTTCGTCCGTTCTCACCCATAGCATCAAAACCACGGGAGCTTTAGGGAACGTAATACAAAAAGTATTACCAATCCAAACCACACAACCGCAAACATGCTCAACCACCACCGTATTGGACGTGACGCCATCGGTGACGTCAACGGTGACGTCGGTACTCAACACGAAGACGACCAATTCAATGCTGAGCTTCAACGTGAATACGTTGCCGAAGGATTTCTTCTCCTCAGCAATCTTGACCAAGATAAGCGAAAGCGTTTGCGATGATTTAGAGCAGATTGTTGGAGCGCAGAAGAAACGTGACGGCGCCGTAGCTGGTAGCGACTTGGAGAATAGTGATGTGCAGCCGATGGAGATCGACGaagAATGTTCGGTGGCCGTATTATCAGCTAAGGAAGATGACGCGAAGTTGGTATTCAGTGAAGCTGCCGATAagTCCGATGCGGACAAGTCGAAGTCGAACAACTACTTCGACGTCAGCCTCCTGTCTAACTTGGACGGTACATCCACGGAGGGTCACGACGCGGAAGCTGAGAGCAAATTTATATTGGGCAAGTTCGAGATCCTGAACGACCAAGATGACGACGATGATGAGGAGCacaCCATAGTGATGGACGGGGAAGACGGCTCCATAATACGTGTCGTGTCCGGACAGAAGTTCATGTACGGTGACAATGAGATATCCCTCGTGGTGCCCGAAGGGGACAGTCTCAATGCAAACGACAATGGAGACAGTCAAGATTCAAACGACGAATCGCAAATCGAATTGCAAGTTTCCGGCGACGAGGAGACGGCGAACGCTATCATTGCGGCCGCACAGGAACAAGGTGGAGCCTTTATAAAGGTGGAATCTGGCGAGATGTTTAGAGTTAAATCTGTTCAGAGCAAACCCGGAGACAACGCTGATGATGCGTCAAAAGATGACTCGCCAATGATCGTCGCGTACGAGAACGGACAGTTCAAATGCTTGCTGTGTGAGAGGAATGGGGATAAAGGGCAGGCGAGGTTCCGCGGGGACGCGCTGGCCACCTCGCAGCACGTGCGCAGCGTGCACGACGCCAAGGTCCACTGCTGCGCCACATGCGGGGCCGTCATGAGGAAGCGGGCCGAGTACCTCGCGCACCTGGATAAACACATGGACAAACTGACAACGGACAAAAGCAAAGTGCACGAGTGTAATATATGCAAAAAGAAATACAGCTCCCGCCAACTGCTGTCCGAGCACTTGAACTCGCACAGCGGGTCCCGCCCGTACCGGTGCAGCGTGTGCGGGAAGACCTTCGCCTCGAAGTACACGCACCAGTCCCATCTTAAAACTCATCTGgaCAGACCGCGTCCCTTCAAATGCAACCAGTGCGGCAAGTCATTCCTCACTCAACAGAATCTGAGCCAGCACGTGAAAACACACTCCGGGATAAAGGACTTTATTTGTAAAGTGTGTGGCAAAGCGTTCGGCACCCAGCACAACCTGGAGGTGCACGGCGTCGTCCACTCGGGCAGCAGGCCCTTCGTGTGCGGCGTGTGCGCCAAGGCGTTCGCCAGGCGCGCGGAGGTGCGCGACCACATGCGGATACACACCGGCGAGCGTCCGTTCGCGTGCGAGATATGCGGGGCGAGCTTCACCCAGCGCTCGAACCTGCACTCCCACCGGCGGGCCACGCACCTGGACGACAAGCGGTACAAGTGTCAGCTTTGCCCCAAACGTTTCAAGCGGCGTAGATTGCTCGATTACCACGTGAAAGCGACGCACACCGGCGAGAGGCCGCTGCAGTGCGAGGTGTGCCGCGCCACCTTCGTGTACCCCGAGCACTACAAGAAGCACGTGCGCATCCACAGCGGGGAGAAGCCCTACGTCTGCGAGGTGTGCGGTAGACCGTTCAACACCCGCGACAACCTGAACACGCACCGGTTCGTGCACAGCGACAAGAAGCCCTACGAGTGCGTGGTGTGCGGCGCGGGCTACATGAGGAAGCAGCTGCTGTACCAGCACATGAACACCAGCGTAAGTGGTGACCACGACCGCATCCGTTGTTTTGGACACCGTCAATGGAACTACATCAAGTATCACGGACGCCACAAGACCTCGGACACCAGCGCCGCCAAGGTGTTCATAACGCAGGACAAAAAGATCATAATACAGAACAACAACATAGAAGGTGTTAAAAACGAATCCATCCTAGAGGCGGACCCTACGGAGCAGCTGCCTGACGACACTCAGTCAATAGTCACCAGCGATGCGTCGGAGGCGTCCGGGTTCCTGAGGCTCGTGCAGGTGCAGTTGTCCGACGGCAGGAGCGGCTGGCTGGCGGTCGACACGTGA
- Protein Sequence
- MNQYCFVCNTRAGISLRNAINIFGENTTLQSGKDLVEVLGEIVERPVKEDGIHSKILCKRCHKICTEYDSIQVRLRVIKTDLLGQFKRTLPRHNLNYDTYNKDADKTILPPPAKKFEGKKIILPASKLQPLPPNFVIKSGKWSNGKPPIGIGAKLNNPDIRILSPSTLNLKVTVGSSVLTHSIKTTGALGNVIQKVLPIQTTQPQTCSTTTVLDVTPSVTSTVTSVLNTKTTNSMLSFNVNTLPKDFFSSAILTKISESVCDDLEQIVGAQKKRDGAVAGSDLENSDVQPMEIDEECSVAVLSAKEDDAKLVFSEAADKSDADKSKSNNYFDVSLLSNLDGTSTEGHDAEAESKFILGKFEILNDQDDDDDEEHTIVMDGEDGSIIRVVSGQKFMYGDNEISLVVPEGDSLNANDNGDSQDSNDESQIELQVSGDEETANAIIAAAQEQGGAFIKVESGEMFRVKSVQSKPGDNADDASKDDSPMIVAYENGQFKCLLCERNGDKGQARFRGDALATSQHVRSVHDAKVHCCATCGAVMRKRAEYLAHLDKHMDKLTTDKSKVHECNICKKKYSSRQLLSEHLNSHSGSRPYRCSVCGKTFASKYTHQSHLKTHLDRPRPFKCNQCGKSFLTQQNLSQHVKTHSGIKDFICKVCGKAFGTQHNLEVHGVVHSGSRPFVCGVCAKAFARRAEVRDHMRIHTGERPFACEICGASFTQRSNLHSHRRATHLDDKRYKCQLCPKRFKRRRLLDYHVKATHTGERPLQCEVCRATFVYPEHYKKHVRIHSGEKPYVCEVCGRPFNTRDNLNTHRFVHSDKKPYECVVCGAGYMRKQLLYQHMNTSVSGDHDRIRCFGHRQWNYIKYHGRHKTSDTSAAKVFITQDKKIIIQNNNIEGVKNESILEADPTEQLPDDTQSIVTSDASEASGFLRLVQVQLSDGRSGWLAVDT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -