Timp021034.1
Basic Information
- Insect
- Teinopalpus imperialis
- Gene Symbol
- -
- Assembly
- GCA_029286865.1
- Location
- JAGSMU010000046.1:1120708-1122525[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0061 0.67 11.4 3.5 3 23 38 58 36 58 0.96 2 16 0.14 15 7.1 0.0 3 23 87 108 85 108 0.92 3 16 0.0032 0.36 12.2 1.0 1 23 128 151 128 151 0.97 4 16 0.00049 0.054 14.8 0.5 1 23 156 179 156 179 0.97 5 16 5.6e-05 0.0063 17.7 3.3 1 23 184 207 184 207 0.95 6 16 0.0056 0.62 11.5 3.6 2 21 210 229 210 232 0.95 7 16 0.019 2.1 9.8 1.6 2 21 239 258 239 259 0.95 8 16 0.0091 1 10.8 3.1 1 23 314 337 314 337 0.93 9 16 0.028 3.1 9.3 0.1 2 23 365 387 364 387 0.95 10 16 0.31 35 6.0 0.3 2 23 410 433 409 433 0.93 11 16 2.9e-05 0.0032 18.7 0.3 3 23 440 461 439 461 0.94 12 16 0.0055 0.61 11.5 4.5 2 23 466 488 465 488 0.93 13 16 0.0031 0.34 12.3 3.3 1 23 493 516 493 516 0.97 14 16 4.2e-05 0.0047 18.2 5.3 1 23 520 543 520 543 0.97 15 16 0.00021 0.024 15.9 0.3 3 23 551 571 549 571 0.96 16 16 3.7e-05 0.0041 18.3 0.6 1 23 577 599 577 599 0.97
Sequence Information
- Coding Sequence
- ATGCCGCAAGGCCCGTACGAGAAATGTACCTCTGAGAGGAGAAGGAAAAATTTGCAAATCCTTTTCAACAACACATCCATCATGCCATTCAAATGGCGAGGGAGATGCCTCTGTTTCTATTGCGGCAAGGGCTACACGGAGTACAAGGACTTTAGGAAACACACCCTCTCCCACGGTCCGTGCACCACCAAAGATTACtcgttaaaactaataaaaggaaaccatatagaaataaaaatcgatGTCTCGAACATAGCATGTGAAATTTGCAACGAACCGTTCACAGCGTTCGATGAAATAATCGATCATTTAATCAGTAAACACTGTATCGATTACGATAAAAGTATCGACACGCCGTTTCAGGAATACAGACTGGCGGATTTCCGTTGTCTGTTTTGCGATCAACAGTTCACATATTTCGGATATTTGGTCAATCATGTGAACAGCATACACCcgagaaataattatatttgcaacGAGTGCAGTgcgaattttaataaaaaacgagaTCTCGCATTGCACTTGCGCCAAAACCATCGCGAGGGCGGCTACCCTTGTTCCGAGTGTACGCAAAATTTCAAATCACACAGCCTCTTACGCAGGCATCAAAACGATTTTCACTTTAGGAAGTGCAAACGATGTGGGTTGCACTTCGCTACGTACAGTCTGTTACTCAAACATATACAGTGTGATCATCCGGACGACGGTAGCGCAAAATGTCCACATTGCTCCAAACAATTACACTCACCACAAGGCCTCAAACAGCATATAAACAAATGCAAAGTTAACACGTTAGTGCAAATAGATCACCCTGTAGACAACAACTTTCTTGACAATATGACCGAACCGAAGAAGAAACAAAACATCCTACAAATACGACAGAACATACAGTGTGTTCTGAACATGACAACGGCGTTACCTTTCAAGTTTTTCgcaaaatattgttgtttttattgctCAAAGAAATTTGTTGAATTCGATGAACTCAAGGAGCACACGCTATTAGAACACCCTGTGTGCGATTTGAAATCGAAATGCATGAAGAAATGTAAAGGCGAGAGGATTACAGTGAAAGTGGATATAAACGGTCTTAGTTGTAAAGTTTGTGAAAAGCGAATCGAAGATCTGGATCTTCTAATTGATCATCTAATATCACAACACAACGCCAATTATGATAAATCGGTATCAGGTTGTCTGGAGCCTTACAAGGTCATAAAGGACAACATGCCCTGCCCTTACTGTCCCCATCGAGTCTTCAGATATTTCGGCATACTCTTGAGACATATTAACTCTGATCATAGTAACAATAACAGAATTTGCGATTTCTGCGGACGCAGTTTCAAGAACGTTACGAATTTAAAAGTGCACATAACATACGCGCACACCGGAGCCTGTGAATGCGACGTTTGCGGTACGAAATACAAGAACCAGTGGTGCCTGAGCCGCCACAAAGCCAAGAGCCACAACGCTAAGGACTTCAAATGTCCAAAATGTCCAGAACTGTTCCAATCACAATACCACAAGCAGAAGCATTTGATCAAGTCCCACGATATTGGTCACAAGTGTACATTTTGCGGGAAGATGTTCACAAGGAACTCCTTCATGAAGGACCACGTCCGCAGGACCCATTTGAAGGAGAAGAATGTGATATGCTCGGTGTGCAACGAGAGGTTCTTCGACAACTATCTGTTGAGAATGCATATGGTGAAACACGAAGGCGAGAGGAAGTTCAACTGTGAGATCTGCGGGAAAGCTTTCCTTAGACGGAGCAATTTGAGTTCGCATAAGGAGATGCATAAAAAGTATGGTcaagtgtaa
- Protein Sequence
- MPQGPYEKCTSERRRKNLQILFNNTSIMPFKWRGRCLCFYCGKGYTEYKDFRKHTLSHGPCTTKDYSLKLIKGNHIEIKIDVSNIACEICNEPFTAFDEIIDHLISKHCIDYDKSIDTPFQEYRLADFRCLFCDQQFTYFGYLVNHVNSIHPRNNYICNECSANFNKKRDLALHLRQNHREGGYPCSECTQNFKSHSLLRRHQNDFHFRKCKRCGLHFATYSLLLKHIQCDHPDDGSAKCPHCSKQLHSPQGLKQHINKCKVNTLVQIDHPVDNNFLDNMTEPKKKQNILQIRQNIQCVLNMTTALPFKFFAKYCCFYCSKKFVEFDELKEHTLLEHPVCDLKSKCMKKCKGERITVKVDINGLSCKVCEKRIEDLDLLIDHLISQHNANYDKSVSGCLEPYKVIKDNMPCPYCPHRVFRYFGILLRHINSDHSNNNRICDFCGRSFKNVTNLKVHITYAHTGACECDVCGTKYKNQWCLSRHKAKSHNAKDFKCPKCPELFQSQYHKQKHLIKSHDIGHKCTFCGKMFTRNSFMKDHVRRTHLKEKNVICSVCNERFFDNYLLRMHMVKHEGERKFNCEICGKAFLRRSNLSSHKEMHKKYGQV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01159895;
- 90% Identity
- -
- 80% Identity
- -