Timp017588.1
Basic Information
- Insect
- Teinopalpus imperialis
- Gene Symbol
- -
- Assembly
- GCA_029286865.1
- Location
- JAGSMU010000030.1:8471315-8484378[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00017 0.019 16.2 4.3 1 23 189 211 189 211 0.98 2 12 5.9e-06 0.00066 20.8 2.2 3 23 225 245 224 245 0.98 3 12 2.5e-05 0.0028 18.8 2.1 2 23 254 275 254 275 0.98 4 12 0.0003 0.034 15.5 2.1 1 23 281 303 281 303 0.97 5 12 2.3e-06 0.00025 22.1 0.8 1 23 309 331 309 331 0.98 6 12 7.9e-06 0.00088 20.4 8.6 2 23 338 359 337 359 0.97 7 12 1.2e-05 0.0013 19.9 0.7 1 23 365 387 365 387 0.98 8 12 6.3e-06 0.0007 20.7 1.4 1 23 393 415 393 415 0.98 9 12 5.1e-05 0.0057 17.9 0.5 1 23 421 443 421 443 0.98 10 12 0.0052 0.57 11.6 2.3 1 23 449 471 449 471 0.94 11 12 6.9e-05 0.0077 17.5 1.6 3 23 479 499 477 499 0.98 12 12 2.9 3.2e+02 2.9 0.9 1 8 505 512 505 513 0.93
Sequence Information
- Coding Sequence
- ATGGCTGCGGTTAATAAATCGCTTCTGAATCTTGATAAAGTATGTCGAGCatgtttgcaaataaaaaaggaCATGCGACCTTTATTCGAACAACTGACTGCGACAATGCTGATGGGTATATCTAAACTGCAGgtatCTATGGGTGACGGACTTCCCGCGCAGTTGTGTTTACAATGTGTGCATCAGATATCGAGATGCCATGCGTTCAAAGATATGGTGGAACGGAATGACATCACATTGCGTGAACAAGTCAAACGTGGGGTGGAGCAAGCTCGTAAGAATGAAGAAAACAAACTGAGTATGAGCTGCGCCGAACAGTCTCAATTTATCCAGTACATCGAGGTGCCCATACTGAGTAACAGCAATCAAATACTGGAGGGATTCTTTACGGACAGCACTGAGCAGCAGCAGAACACTCAGGAGATTCTGCAAAAGGAGAGCTATGAAATTGAGAAGCAGGCACTAACTGACCAAAGTCAGCCGGCGAAAGATGATCCACTGGAAGAAGACAATTACATGCAACTGGTTGTGTTCCAAGTTACGTCGTCAGTGTCCCCCGGCCGCCATGTATGCAACCTATGCCAGAAGGAGTTCAAACATGGCCGATGGCTGAAGCTTCATATGAGATCACACGCCAACTGGATCAAAGCTAACTGCAAGAAACCTCCCATGTGTCATGTCTGTAAAAGAACTTTCAGGGGCCCCGGCATGTTGCGAATGCACATGCGGACACATGAACAACGCCCACCGAAGCAGCCCACTTGTTCGGTTTGCCAAAGAACTTTCCCGACAAAAACCCTCCTCTACCGACACAGACAGACACACTTCGAGCAGAAAACCCACCAGTGCACCATTTGCGAGAAACGCTTCTTTAGCGGCTACGCGTTAAAGTCGCATTTGGCTCGGCACAGAGGCGAGAGGCCGTACGTCTGCTCGATCTGCTCGAAGAGCTTCTATAATCCTACTGATTTGAAGgTTCACTTCAGGTTACACACGGGTGAAAAACCACTAAAATGTACCGAGTGCAACAAGACGTTCCGTCGCCACTCGACCCTGTGTCAGCATATGAAGAAACATCGCGGCATACGAAATCACGTGTGTTCAGTTTGCAATAAAGGCTTCTATGAAGTGTCCAAGCTTAACGCGCATATGAGAGTACATACCGGCGAGCGTCCGTTCGAGTGCCAGTTCTGCGAGCGCAAGTTCGCCCAGCAGTCTGCGTTAATCTATCACCGGCGCACGCACACCGGCGAGAAGCCGTACAACTGCAAGGTGTGCCCGGCGCGTTTCACCACCTCCTCAGCGAGGAACAACCACATGGTCACACATACCGGCCACAAGAGGTTTTTATGCCCTGTATGCTTCAAAGGCTGCACATCTAGGACGGAGCTCCGCGTGCATTCGAGCAAACACACGGGGGAGAAGTTGTTCGGTTGCGAGCATTGTTCGCAGCGCTTCAGCTCTGCGTCGTACCTCGCCGTGCATAGAAGATACCATACTGGTGAGAGGAAGTACCAATGCGGTGTATGTGGAAAGGGTGAGTAG
- Protein Sequence
- MAAVNKSLLNLDKVCRACLQIKKDMRPLFEQLTATMLMGISKLQVSMGDGLPAQLCLQCVHQISRCHAFKDMVERNDITLREQVKRGVEQARKNEENKLSMSCAEQSQFIQYIEVPILSNSNQILEGFFTDSTEQQQNTQEILQKESYEIEKQALTDQSQPAKDDPLEEDNYMQLVVFQVTSSVSPGRHVCNLCQKEFKHGRWLKLHMRSHANWIKANCKKPPMCHVCKRTFRGPGMLRMHMRTHEQRPPKQPTCSVCQRTFPTKTLLYRHRQTHFEQKTHQCTICEKRFFSGYALKSHLARHRGERPYVCSICSKSFYNPTDLKVHFRLHTGEKPLKCTECNKTFRRHSTLCQHMKKHRGIRNHVCSVCNKGFYEVSKLNAHMRVHTGERPFECQFCERKFAQQSALIYHRRTHTGEKPYNCKVCPARFTTSSARNNHMVTHTGHKRFLCPVCFKGCTSRTELRVHSSKHTGEKLFGCEHCSQRFSSASYLAVHRRYHTGERKYQCGVCGKGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -