Timp021164.1
Basic Information
- Insect
- Teinopalpus imperialis
- Gene Symbol
- -
- Assembly
- GCA_029286865.1
- Location
- JAGSMU010000046.1:2311249-2319748[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0014 0.15 13.4 0.1 1 21 19 39 19 40 0.96 2 19 0.0025 0.28 12.6 0.1 2 23 112 133 111 133 0.97 3 19 0.23 26 6.4 0.2 1 16 137 152 137 154 0.81 4 19 0.035 3.8 9.0 0.2 1 20 248 267 248 269 0.94 5 19 0.0016 0.18 13.2 1.2 2 23 341 362 340 362 0.97 6 19 0.0044 0.49 11.8 0.2 1 23 366 388 366 388 0.96 7 19 0.093 10 7.6 1.5 1 21 393 413 393 416 0.74 8 19 0.008 0.89 11.0 0.9 1 23 422 445 422 445 0.95 9 19 0.0028 0.31 12.4 0.3 1 23 452 475 452 475 0.95 10 19 1.3e-06 0.00014 22.9 0.6 1 23 482 504 482 504 0.97 11 19 7.3e-07 8.1e-05 23.7 0.6 1 23 510 532 510 532 0.98 12 19 0.00028 0.031 15.6 1.2 2 23 536 557 535 558 0.94 13 19 0.0042 0.46 11.9 0.5 1 23 646 669 646 669 0.94 14 19 0.11 13 7.3 2.2 2 23 696 718 695 718 0.94 15 19 0.073 8.1 8.0 1.9 1 23 740 762 740 762 0.98 16 19 5.8e-05 0.0065 17.7 0.5 1 23 766 788 766 788 0.98 17 19 0.0021 0.24 12.8 0.1 1 23 822 845 822 845 0.90 18 19 0.0048 0.53 11.7 0.8 1 23 852 875 852 875 0.96 19 19 0.00077 0.086 14.2 3.8 1 23 882 904 882 904 0.97
Sequence Information
- Coding Sequence
- ATGGCAAATAGAGAAAGATGCGCAGACGGTCACGCTCAGTGGCGACAGAGTAGATTTAAATGCGCGTATTGCAGTGAGGGTTTCGCTCAAGCGTTCGATTTGAGGGAACACGTTAGGGCATGCTCTGAAGACCACTCTATCGATGATATCTTCCGCGGTCCGAAAGAGACTCCTCTAATCAATGTGGACATAACTGACGCAGTCTGCCGCTTCTGCTcttgtctgttcccaggggtgGATGCGATGCGACAGCACGCTGTCCAACACGGCTTTGAATTCGACACCAGTGTCAAGAATAGTATCATTCCATTTATCTTGAACCACGAGGTCTGGCGTTGTGCCTTGTGCGATGAGAGCTTCGGTGTCTTTTTCGAACTCTACAAGCATATGAACGTTCACTATGAGCGCTTCACGTGTAAAACTTGCGGGAAAGGCTACATGACTGCCATAAGACTGAAGAGAAGAGGCACTTGGAAGTCCATGTCAAAGGATCATACCCGTGCGATTTGTGCGACGAAACATTTACAGTCCGGACGAAAAGGATATCAAGGACGAAGGGAACATGAAATTGTACAGGTAGAAACCACCGATGATACGCAATTACGAGAACTAATCAAACTGAAGGTAAAGAGACGCTATGTCCGAAGCGCCAGGGCAGAGGCCAGAATTGTTACCAAGAGAAACGCCAACACCCTCTTGGAGTGCTGGTCCCTGTGCCCATTCAGATGGCAACGTAACCGTTTCAAGTGTGCATATTGCGAGGAGAGCTTCATAGAGTGTGACGTTCTCAGGCAACACGTTGCCGAGTGCTCATCGAGGCACAGCGTCAAGGATATTTACAgcaaatttaaagaaatgtcGCTTATTAACGTCGATGTGACTAACGCCTCGTGCCGCATGTGTAGCTCCCCTTATTCTGGTATCAATCAAATGAGACAGCATGCTGTCCAGCATGGATACGAGTTCGACGCTTCCCAACCTGATGGCGTTCTGCCGTTCAGTTTGGACAAAGAGTGCTGGCGCTGCGTCATTTGTCACGAAGTCTTCAATAATTTCCTCAAACTGTACGAGCATATGAACACACACTACCAACACTACATATGCTCCACTTGCGGCAAAGGTTACATGACAGCGCCACGATTGAGAAAACATTCCGAAGTGCACATAACGGGCTCGTTTCCTTGCGACAAATGCGACAGGGCGTTCACTATGCGCGCAGCTAGGGACCATCATAAAGCCCACGCCCACGCGAAGGGACCTCGCTACGAATGCCCCCATTGCAATGTACGTTTCAACGGATACTACGACAGAATGAATCATTTGAACGAGGCTCACAGGGAGAAGGAAGTTGCTTATCGGTGCAACGTCTGTGAGCTGACGTTCAAGACCAGCGGTAAGCGAGCGATGCACGTACGCGCCGTGCATCTGCCCCAGCCCCGCAACTTCGCGTGTCCTTACTGCGATTGGCTTTTTAAGACCAGCTACGAGCTGAAGAGGCACATGGTGAAGCATACCGGCGAAAGGAATTTCTCGTGCACGATCTGCGGGAAAGCGTATCCGAGGAATCGGGCTCTGAGGACTCATCTGAAAACCCACGAGGACCTGACCTGCAAGTGGTGTGGGGCTCTGTTCAAACAGCGTGCACAGTTGCTGTCGCATACGCGGATACATCATCCGGATTTGAATGAATTGATAGTGGTAGGATCGGATAAGATTTCGTGTACCGCTAATGCGGTTTCGGTGGCATACGTAATTAAGCGAGTCAGAAAGTTAAAAGAGAACGTTAGCGCCCGGCAGATGCGAAGACGCCGACGAGCCAACAACGAGTTGCCTGAAGAGTCGGAGGGGCGAATCTCTAAAACAATGATGAGAAGGAACGCAATGGTCATTTTAGAATTTTCGACAGCGTGGGCCTTTCGTTGGTTTCATAGCGCGTTCTTCTGCTCCTATTGCGACGAGAAATTCGTAGACACAACACCTTTACGAGAACACGTAGTAACTTATCACCTCACAGACTGTCCCACCAAGCGCGTGTTTTCCAAACTGACTGAAAACAATATGCTCAAAATTgacattagtaatttaaaatgcaaactTTGCAGCTTTAATTGTAACACTATAGACGCActtaaaaatcatttaacaaTAACGCATAGGAAGACAATTAATAAAGAGTACAGTGACGGAGTTTTACCTTTCAAACTAGATCAGAATGGATTTCACTGTCAGATATGTTTTGAGTATTTCGCTAGCTTCGCCAAGATCAACGAACATATGAACTCACATTACCAAAACTACGTATGTGATGCTTGTGGGAAGGCTTTCGTATCGAAGTCCAGGTTCAGGACTCACGTGCAGTCACATGAAATTGGAAGCTTCCCTTGCGGTGAATGTGATGAGGTCTTACAGACTCGGGCGGCGCGCATGTGTCATAGATTGAAGGTGCATAAGAAAGGTGTCCGATATACCTGTCCTCGGTGTCCCGAGGTTTTCACTACTTACTATGCAAGAGCCAAACATTTAGTTGAAGGGCACGCACAGCGAAGGAGGGATTACGAGTGTACCGCATGCGGTAAAGTCTTTGAGACCAGTTGCAAAAGAGCAGCTCATTTCCGCGTAGCTCACAAACCTGTCGAGAAACGATACGAGTGCCTTTACTGTTCTTGTTACTTTGTCAGCAAATCGAAACTGAGACGTCATTTGCAAGCACACGACGCTGTTGGCCCAGCGTAA
- Protein Sequence
- MANRERCADGHAQWRQSRFKCAYCSEGFAQAFDLREHVRACSEDHSIDDIFRGPKETPLINVDITDAVCRFCSCLFPGVDAMRQHAVQHGFEFDTSVKNSIIPFILNHEVWRCALCDESFGVFFELYKHMNVHYERFTCKTCGKGYMTAIRLKRRGTWKSMSKDHTRAICATKHLQSGRKGYQGRREHEIVQVETTDDTQLRELIKLKVKRRYVRSARAEARIVTKRNANTLLECWSLCPFRWQRNRFKCAYCEESFIECDVLRQHVAECSSRHSVKDIYSKFKEMSLINVDVTNASCRMCSSPYSGINQMRQHAVQHGYEFDASQPDGVLPFSLDKECWRCVICHEVFNNFLKLYEHMNTHYQHYICSTCGKGYMTAPRLRKHSEVHITGSFPCDKCDRAFTMRAARDHHKAHAHAKGPRYECPHCNVRFNGYYDRMNHLNEAHREKEVAYRCNVCELTFKTSGKRAMHVRAVHLPQPRNFACPYCDWLFKTSYELKRHMVKHTGERNFSCTICGKAYPRNRALRTHLKTHEDLTCKWCGALFKQRAQLLSHTRIHHPDLNELIVVGSDKISCTANAVSVAYVIKRVRKLKENVSARQMRRRRRANNELPEESEGRISKTMMRRNAMVILEFSTAWAFRWFHSAFFCSYCDEKFVDTTPLREHVVTYHLTDCPTKRVFSKLTENNMLKIDISNLKCKLCSFNCNTIDALKNHLTITHRKTINKEYSDGVLPFKLDQNGFHCQICFEYFASFAKINEHMNSHYQNYVCDACGKAFVSKSRFRTHVQSHEIGSFPCGECDEVLQTRAARMCHRLKVHKKGVRYTCPRCPEVFTTYYARAKHLVEGHAQRRRDYECTACGKVFETSCKRAAHFRVAHKPVEKRYECLYCSCYFVSKSKLRRHLQAHDAVGPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -