Timp010103.1
Basic Information
- Insect
- Teinopalpus imperialis
- Gene Symbol
- -
- Assembly
- GCA_029286865.1
- Location
- JAGSMU010000016.1:12187762-12196590[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.011 1.2 10.5 0.9 3 23 208 229 207 229 0.92 2 23 0.23 26 6.4 0.3 1 22 606 627 606 627 0.95 3 23 4.6 5.1e+02 2.3 0.3 1 22 669 690 669 692 0.82 4 23 0.0033 0.37 12.2 0.4 3 21 703 721 701 722 0.94 5 23 1.3 1.4e+02 4.1 0.0 3 23 731 752 729 752 0.89 6 23 0.14 16 7.0 0.1 3 23 773 794 771 794 0.96 7 23 0.0013 0.14 13.5 2.5 1 23 800 823 800 823 0.95 8 23 0.086 9.5 7.7 0.0 1 23 849 872 849 872 0.90 9 23 0.0038 0.42 12.0 3.5 1 23 877 899 877 899 0.97 10 23 0.0065 0.73 11.3 0.2 1 23 905 928 905 928 0.95 11 23 0.0016 0.18 13.2 1.3 1 23 941 963 941 963 0.97 12 23 0.00012 0.014 16.7 1.8 1 23 1012 1035 1012 1035 0.97 13 23 0.0033 0.36 12.2 1.7 1 23 1096 1119 1096 1119 0.96 14 23 0.00076 0.084 14.2 2.1 2 23 1144 1166 1143 1166 0.95 15 23 0.023 2.5 9.5 0.1 2 23 1172 1194 1171 1194 0.95 16 23 0.0068 0.75 11.2 0.2 1 21 1237 1257 1237 1258 0.95 17 23 0.00029 0.032 15.5 1.0 1 23 1268 1290 1268 1290 0.93 18 23 7.7e-05 0.0085 17.3 0.3 2 23 1379 1401 1379 1401 0.93 19 23 1.2e-07 1.4e-05 26.1 1.1 3 23 1408 1428 1407 1428 0.98 20 23 0.0022 0.24 12.8 0.1 1 23 1447 1469 1447 1470 0.95 21 23 0.098 11 7.6 0.0 1 23 1490 1512 1490 1512 0.98 22 23 0.019 2.1 9.8 0.6 1 23 1518 1541 1518 1541 0.95 23 23 0.00017 0.019 16.2 0.4 1 23 1549 1572 1549 1572 0.96
Sequence Information
- Coding Sequence
- atgagTGTGAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAAGCGAATTACTGCCGATATTTCCTACCACCAGTTCGGATGACTCCGAACCTCCTGTCCTCGCATTAAAAATTAAGGATTGTGTGTCTGTAGAGataaATGAAGATGACGACCTGCCATGTAATGTTTGCAGAAAATGCAGTGATAATGTTAATAACTGGCATGTTTTTAAGGCTGTATGTGAAAGGACACAAAACAAACTACAGTCTTTGATTAAAAATGATGGCAGCCAACTAGAAGAGGTGCAAATAAAAAGTGAACCTTTATCTGATGAGGCTTATGATGATGGAGTGGTAATTGATGCATCATATCCTGACCTTGAGaATGCATCCACATCCAGTAAAGTACAACCAGAAGGCCCACCTATCTTGGCTTCGCTGGGTCTCACACCAAGGAGTGATAAGGGGATGGAGAGTGAGAATAATGAAGAGGAATACTACGATGATGAGATGATTGATTCCAGTCAACATTTTACTAGCGTACCCAACATGCCTGAAGTATCCATCACTGTAATGCGTCCCTCCGGTGAGACTTTACATGCCCGTCAAGGAATCCAACAATTAGCTTCGAAGGATTGCCTTGTATGTGGTCGATCCTATAGATACTCTCATAACGCCAGACGTCATGAGCTCAATGCACACAGTTTTGACAGATATACAAATAAGATAACCTCCAAAAAGTCTAATGCACACATGCATTCAAAACTTAGACCCAATCCATTTAATCCCAAAGCAAGACTCATGCCTAATCCGATCAGTCATAAAATGCAGCTTATTCCTAAAGGGATAAGTGCGAAAATTATGCACCATAGTAAGGCTGTGACTCCACCGAAACCTATACCAATCAAAACGCCAAAGGGTTCTCaaaataatttaccatatcCCCTTCGCATAAAAGCGCTTAAAGacttacaaataaagaaaaaagaaccgCAAATCCTTAAAACTTTATTGACGACAAAACCTGAAGTTCTAGTATCTGAGCCAGAAATCATTAATTCGGCCCCAGAAAGTCCAGAAACTTTAATATCTGAGCCAGAAATAGCGTCATTCCAAGTAGAAGCTATTCTTTCAGAACCAGATGCTTATATTAATCAAGAAGACGAAGACATAGATGGTAATGTGCAAAATAATCAAAGTCAAAATTATGACACTGTTGATATGGATTCTgataatgaaattgaaatagcACGTCAGCAAGAAGGTGCAGTTGATCCTGAATGTGAAGACCATCAAGTTGATAATGAAAGAGAAGGAAATGAAATAGATAATTTGGATAATGAAGACGAAAATAATATGGAAAGAAATCAAAGTGATAATGATCAGATTGATGATACTGCTGATAGTCAAGAGCAGGTTAATGACACTAATTGTAGAGATGAGGATGAGACTAAAGAAGGTGAAGAAATGGGTGAGGATAGAGATGATGAACAGATGGAATATAatcatgacgatgatgatgatgatttaccGCCTATAGCTCCAGTAGTAGAAATTAATGAAGATATACAGATCAACTCTTATAACAGCGAAATAAATGAGGAAGAGGAACTTGAAGATACAGGAGATCCTAATGAGACCGCAGATGACATTAAAGAACTTGATCCTGACAAAGTATATGTAACAAAAACACAAAGAGACTTTATTCTCAAATATCGTGATATTATCGAACAGATCAACACCAAAATATGCCTTTGTTGTGATAGAGAACACCCTCGGCGTAAAGCTGTTATACAACATTTGCAAAAGAACGGCCACAAGGTCCCTAAACATACATGCTATAATTGTGTTGTTACTTTTGGCCATATTGGCGCACTACTTAGTCACATGCGATCTAACACGTGCACAGATTTatggaaaattatttacaatgaaaatGGAATCACCGATGATTTAGTTTTAGAAGAGGAGCCTAAAGACACCAAAGtacaatataaagatatatttaatgctAGATCATATGCGTGCAAATTGTGCCCAGCAAAATTCCAATTGAAACAGTTTATAATGAAACATGTATTGGATGTGCACGAGGATGGACAATCTCGTGTACATCTTGCATGTGTTCACTGCGGTTCAAGATTCAAAGACAAGGCCATGTGGAAGAAGCACATCCGCAATGGGGAGTGTACGGTTTACATTGCGTGCGATTTATGCACAGAGAGATTTGGCAACATGCAAGATTTCAATGATCATGCGTTGGCAGTACACGCCGGAAGTTTTGATCAATCTGAAAACCAGAACAAGTGTGTCGACGGACGACCAACGGATTGTCCTATTTGCGCAAAGAAGAACAGCAGCTATCCTAATTTAGTGAAACATTTAAAGATTATACATAGTGAAGAAAAACCACATTATTGTCAGCATTGCGATTCTAAGTTCGAACAAGCTGCTGACcttaataaacacatatatatggAACACTCTGATAGAACCTTGGGAATGCAAAGCAGCGAACCCGATATGTCGCTCGTTAAAGAAGAGGCAGAGGAATACCATTACTCATGCACAGAATGTAACGCCATATTTGAAACCGTCGATGCTTGGACAGATCATCAGGTGGCTGAACACAACCAAGTTGCTCATCATTGTGatcaatgtgataaaaagttTCTTAGGCCATCTGAACTGGCGGAGCACAAGAATACGCATTTAAGAGTCAAATTTTATCCGTGCAGTATATGCTCTAATTCCTATAGCACACCTCAAAAACTTTCCGAGCACGTTCAACAAGCTCATCCTGGCGCGGGCGCTTACGTCCCAATGGACTCGGAGTTTTTCTGTGACATTTGTATTAGATCCTTCAAAAGTCGTCAGGCTTATTCAAACCATATGCGTATACACGCTAAAGTGCCAACTACTAATAGAAAACCCGGAGATCCAAAGGGATTCGCTCCGCAAATTGTTGGAAAACCTATTAGATCTTTTTCGATGGTACAACCTagctttctttcttttaaaccAAATTGTAATGTACCAAATGCGCCTTATTCGTGTGATATATGCGGAAAGGGTTTTATgcacaagaaaaatatatggaaGCATAAGAAAGTGCTACATGCTGATCTTGTTGGCGATAGAAATGATAGCGAAGATAATACTATGCAAGCTTCTACAGAGGAGGACGAATACAATTACGACGAAAATGGCGCCATTCTGTCGACACCGcagtttaatagttttaattttaccaaTTTAACAAATAGCTTACAACAACAAACTTCTCAAGATGCAATGCCTTATTCTTGTGAATTGTGCTTTAAACGATTCCCACTTAGAACAAGCTTGTGGAAACATAAGCGGGCTAAACATGGAATTATCAATGCCAGTGCTAGTGGCAGTTCTGATTCTCAAATGATGGGAGGGGAAGGTCAAGGCAGATCGAGTTGcactatttgtaaaattacattttcagacaaaaaatcttactaccgCCATAGAAAAAACGTTCACAAATCTTCAGCACAGATGTGTAAAATATGCGGAAAACCTTTAAATTCAACTTTGGAACTATATGAGCATCTAAAATCGGCACATGCTAGGGAGTTATTGGGATATAATGCAAACCAAGGTTCTAGTAAACAGGAAATTGTTCAAGATATAGAAGCAGAGTATGAAGGTGATCAGGATTCAATAGACCCCACCGTGGAATACCAGGCCCGTTATCCGTGTGACACGTGTGGCAAACAGTTTGTGGGCTTGCTCGCGCTGCAAAACCACCAATGTATCAATCAAATACAGTCATCTCCTCAAACATTTGATTGCGAAATTTGCCACAAAAGTTACACATCTATATCCGCATTAAAGAGCCACCGCGGTTGGCACTTGCGCTCCCCTGACGGCAAAGCTGCTGCTAACAATACTGGCCTTTGGATGCCTCAGCATAAAGTTACAAGCAAAGTCAGCAAACACGAGGTCGTCGATCCCTCTCAGCTGGCAAAAGTTACTCATTCAACACCAGCAATCGTAGCTAAGAGGAGATTACCACCCGAAGTTGAAGTAACAGTAGTAAACCCAAACAAAAAAATGCGTTCCGACGATTCCGTTGAATTAGAACAGCAGAACTCTTCCACTGGAGCGGAAGATAGATATTGTACAATATGTGATAAAGAATTTACGAAGCGAGCGGCTTATCAGCGTCATATGGATGAAGTTCATCAACCAAATTCCGTGTTCTGTCCCGTCTGCGACAAGAGTTTTACACGTAAATCTACTCTGATTGTTCATATGAAGAAACATTATGAAAGTGGGGAGGGCAGTTCCGCTATGATTGATCAAATTGAAGATGATGTTTATCCATGTGACCTTTGTGGCGTGCAATATGATAATGAAAGCGCACTTAGTGCCCACCGAGCGATGCATCATGGTGATGATTCTGGCGAGTCTGAAGACGATGGTACCAGTGTCGCCCCCCCTGGCGAATTCACTTGCGCCCAATGTGGAGATGGTGTTGCCACACCTAGGGACCTTATCGCCCATAGGTCCATGCACGCAACTCCTACAAAATTCTTCTGCAACATTTGCAAAGTTTACTTTGCCAGAGCACTCGACCTCTCGTCACATACGCGAGCAAGACACGCAGACAATGAAAAGGTCTTTTTTCCATGTGCGATGTGCGACCGGTTTTATATGAATAAGAAGAGTCTGCAACGGCACATCGAGATGGCCCACTGA
- Protein Sequence
- MSVNYDRVCRLCLSSRSELLPIFPTTSSDDSEPPVLALKIKDCVSVEINEDDDLPCNVCRKCSDNVNNWHVFKAVCERTQNKLQSLIKNDGSQLEEVQIKSEPLSDEAYDDGVVIDASYPDLENASTSSKVQPEGPPILASLGLTPRSDKGMESENNEEEYYDDEMIDSSQHFTSVPNMPEVSITVMRPSGETLHARQGIQQLASKDCLVCGRSYRYSHNARRHELNAHSFDRYTNKITSKKSNAHMHSKLRPNPFNPKARLMPNPISHKMQLIPKGISAKIMHHSKAVTPPKPIPIKTPKGSQNNLPYPLRIKALKDLQIKKKEPQILKTLLTTKPEVLVSEPEIINSAPESPETLISEPEIASFQVEAILSEPDAYINQEDEDIDGNVQNNQSQNYDTVDMDSDNEIEIARQQEGAVDPECEDHQVDNEREGNEIDNLDNEDENNMERNQSDNDQIDDTADSQEQVNDTNCRDEDETKEGEEMGEDRDDEQMEYNHDDDDDDLPPIAPVVEINEDIQINSYNSEINEEEELEDTGDPNETADDIKELDPDKVYVTKTQRDFILKYRDIIEQINTKICLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFGHIGALLSHMRSNTCTDLWKIIYNENGITDDLVLEEEPKDTKVQYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRVHLACVHCGSRFKDKAMWKKHIRNGECTVYIACDLCTERFGNMQDFNDHALAVHAGSFDQSENQNKCVDGRPTDCPICAKKNSSYPNLVKHLKIIHSEEKPHYCQHCDSKFEQAADLNKHIYMEHSDRTLGMQSSEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCDKKFLRPSELAEHKNTHLRVKFYPCSICSNSYSTPQKLSEHVQQAHPGAGAYVPMDSEFFCDICIRSFKSRQAYSNHMRIHAKVPTTNRKPGDPKGFAPQIVGKPIRSFSMVQPSFLSFKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADLVGDRNDSEDNTMQASTEEDEYNYDENGAILSTPQFNSFNFTNLTNSLQQQTSQDAMPYSCELCFKRFPLRTSLWKHKRAKHGIINASASGSSDSQMMGGEGQGRSSCTICKITFSDKKSYYRHRKNVHKSSAQMCKICGKPLNSTLELYEHLKSAHARELLGYNANQGSSKQEIVQDIEAEYEGDQDSIDPTVEYQARYPCDTCGKQFVGLLALQNHQCINQIQSSPQTFDCEICHKSYTSISALKSHRGWHLRSPDGKAAANNTGLWMPQHKVTSKVSKHEVVDPSQLAKVTHSTPAIVAKRRLPPEVEVTVVNPNKKMRSDDSVELEQQNSSTGAEDRYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMKKHYESGEGSSAMIDQIEDDVYPCDLCGVQYDNESALSAHRAMHHGDDSGESEDDGTSVAPPGEFTCAQCGDGVATPRDLIAHRSMHATPTKFFCNICKVYFARALDLSSHTRARHADNEKVFFPCAMCDRFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01155687;
- 90% Identity
- -
- 80% Identity
- -