Thag107267.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tanypteryx hageni
Gene Symbol
ZIPIC
Assembly
GCA_028673005.1
Location
CM054119.1:10022972-10058908[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 4.2e-06 0.003 20.6 2.2 1 23 10 32 10 32 0.98
2 25 0.0098 6.9 10.0 3.9 2 23 38 59 37 59 0.96
3 25 3.8e-07 0.00027 23.9 1.6 1 23 149 171 149 171 0.99
4 25 0.025 18 8.7 4.2 1 23 177 199 177 199 0.97
5 25 0.0017 1.2 12.4 9.7 1 23 205 227 205 227 0.98
6 25 0.0016 1.1 12.5 0.2 2 23 262 283 261 283 0.96
7 25 0.027 19 8.6 0.3 3 23 290 310 289 310 0.96
8 25 0.00056 0.39 13.9 0.1 1 23 316 338 316 338 0.99
9 25 3.2e-05 0.022 17.8 3.4 1 23 344 366 344 366 0.98
10 25 1.4e-05 0.01 18.9 1.0 1 23 372 394 372 394 0.96
11 25 2 1.4e+03 2.7 3.0 2 13 460 471 459 482 0.78
12 25 0.66 4.6e+02 4.3 5.1 1 23 487 509 487 509 0.95
13 25 0.92 6.4e+02 3.8 2.2 5 23 519 537 518 537 0.91
14 25 0.0016 1.1 12.5 0.2 2 23 568 589 567 589 0.96
15 25 0.027 19 8.6 0.3 3 23 596 616 595 616 0.96
16 25 0.00025 0.17 15.0 0.3 1 23 622 644 622 644 0.98
17 25 0.00016 0.11 15.6 3.6 1 23 650 672 650 672 0.98
18 25 0.00019 0.14 15.4 1.2 1 19 678 696 678 696 0.98
19 25 2 1.4e+03 2.7 3.0 2 13 760 771 759 782 0.78
20 25 0.97 6.8e+02 3.7 5.2 1 23 787 809 787 809 0.95
21 25 0.92 6.4e+02 3.8 2.2 5 23 819 837 818 837 0.91
22 25 0.001 0.7 13.1 0.4 2 23 868 889 867 889 0.96
23 25 1.4 1e+03 3.2 0.5 3 19 896 912 895 914 0.94
24 25 7.3e-06 0.0051 19.9 0.8 1 23 974 996 974 996 0.99
25 25 9.6e-05 0.067 16.3 2.2 1 23 1002 1024 1002 1024 0.98

Sequence Information

Coding Sequence
ATGAAGATCCACGGGACGGGAAAACCTTTCATGTGTTCTTACTGCGGGAAGAGGTTCGTCAGGAAGGATCGAGTTGAGAAGCATCAGAAGATGCACGAACAAGAGGATATCGAATGCAGGATGTGCTTACGGAAGTTTCGTATGAGGCACCATCTGATGCAACATATGGTGGTGCATTACCGAGGGAAGCAACATCAATGCGATAATGGCAATACGAGCTACAATATAGATTCGGAGTCGGAGGTTCAACAGGCCGCAGACAACAGGGAAAAGGATTCTGAGGTGAGAGTCCTAACCAGAGAGGAGAAACCATCGTCGTCCGGGACGGCTGTGCCTAGCTTATGGAGGATGCAAGATGAATGCTCAAGCATCGCAGAGCAGCAGCACACAGAAAagaagtcagaagaactgatgaACAAGGAGGTAGATAAAAGTCAGAAGGTGTACAAGTGTCAAAAATGTGGGAAAGAATACTCGACAAATTGGTACTTAAATACCCACATGAAGATCCATTGGATGCAGAAACCTTTCGTGTGTTCCACGTGTGGAAAGAGGTTTCTATTGAAGCACCATGTAGTGCAGCATCAGAAGGTGCACGATGAGAAGAAAGGTTTCGAATGCATGCATTGTGGGAAGAAGTGCCATAGGGAGCACAACCTAAAGAAGCATCTCATGGTGCACAGCAGAAATAAGAGAGACCAACACGGTAACGATGGTGCGAGCTCCAATATAGAGTTGAAATCTGAGGTACAAAAATCTGTGGACAACAAGGAGAGGCTGTGGGAATGTAAGGCTTGCAGGAAGACTTTCGAAAAGTGGGAGGATTTGGTCGAGCACCGCGAGTCTCATTTGGGGGAGGATATGTTGTGTAAAATATGCGGACAGAAGTTGGGCAACATGGACGAGTTGAGGACGCACGTCACGAATCACATGGGAGTGGAGCTGTTTAAGTGCGGCATTTGTGGAATGCCGTTCTTGACAAGTGGCATGCTTGGTTGGCATATGAAATCACACACGGACAAAGGGAAATACTCTTGCAACATCTGTGGATGGCGTTACAGTCAAAGGTGTAATCTTTTAACTCACAAGAAGAGCCACGCAAAGGAACGTCCGTACTCTTGCAAATTGTGCGACAGGACATTTAAAAAGAAGGAGCAGTTGGAGGATCATGAGGCATCGCATTCAATGGACTCTGAGGCGCCAGTCCAAACCAGAGGGGAGAAATCAACGTCGTCCGAGATGGCTGTGCCTAGCTTAAGCAGATtgcaaaagaggaagagagttgAACAGTCGAGCATCGCAGAGCAGCAGCGGAAGATGGAAAAGAAGGCAGAAGAAGTGATTGCCGAGGAGATGGATAAAATTCAGAAGGTATGCAAGTGTCAAGAATGTGGGAAAGAATATGCGAAGAATTGCTACACAAATAAAAACATGAAGCTCCATTGGACGCAGAAACCTTACATGTGTTCCAACTGTAGGAAGAGTTTTCTATTGAAGCACCACGCAGTGCAGCATCAGAAGGTGCACGATGAGAAAAAGGATTTCGAATACATGCAGTGCGGGAAGGAGTGCCATATGGAGCACAACCTAACGAAGCATCTCGTGGCGCACAGCGGAAAGAAAAGAGACGATGGTGCGAGCTCCAATATAAAGTTGAAATCTGAGGATCGACAGTCTGTGGACAACAAGGAGAGGCTGTGGGAATGTAAGGCTTGCAGGAAGACTTTCGAAAAGTGGGAGGATTTGGTCGAGCACCGCGAGTCTCATTTGGGGGAGGATACGTTGTGTAAAATATGCGGACAGAAGTTGGGCAACATGGACGAGTTGAGGACACACGTCACGAATCACATGGGAGTGGAGCTGTTTAAGTGCGGCATTTGTGGGAGGCGATTCTTGACAAGTGACATGCTCGGTTGGCATTTAAAGTCGCACAGGGGCAAAGGGAAATTCTCTTGCGACATCTGCGGGTGGCGTTACAGTCATAAGTGTAGGCTTTTAATTCACATGAACAGCCACGCAAAGGAACGTCCGTACTCTTGCAAATTGTGCGACAGGACATTTAAAAAGAAGGAGCAGTTGGAGGAACATGATTCTGAGGCGACAGTCCAAACCAGAGGGGAGAAATCAACGTCGTCCGAAATACCTGTGCCTAGCTTAAGCAGATtgcaaaagaggaagagagttgAACAGTCGAGCATCGCAGAGCAGCAGCGGAAGATGGAAAAGAAGGCAGAAGAAGTGATTGACGAGGAGATGGATAAAATTCAGAAGGTATGCAAGTGTCAAGAATGTGGGAAAGAATATGCGAAGAATTGCTACACAAATAAAAACATGAAGCTCCATTGGACGCAGAAACCTTTCATGTGTTCCAACTGTAGGAAGAGTTTTCTATTGAAGCACCACGCAGTGCAGCATCAGAAGGTGCACGATGAGAAAAAGGATTTCGAATACATGCAGTGCGGGAAGGAGTGCCATATGGAGCACAACCTAACGAAGCATCTCGTGGCGCACAGCGGAAAGAAAAGAGACGATGGTGTGAGCTCCATTATAGAATCAAAATCTGAGGTTCGACAGTCTGTGGACAACAAGGAGAGGCTGTGGAAATGTAAGGCTTGCAGGAAGACTTTCGAAAAGTGGGAGGATTTGGTCGAGCACCGCGAGTCTCATTTGGGGGCGGATACGTTGTGTAAAATATGCAGACAGAAGTTGGACAACATGGACGAGTTGAAGATACATGCTTGCGACGCAGCAGTCCAAACCGGAGATGAGAGTCCATTGTCGTCTGAGATGGCTGGACCTAGTTTAAGCAGCTTACTAATTAGGAGGAAGGTCTCACGATCGGACGTCAGAGAGCATCAGAAGCAGCTCGACGTGATGAGGAAGCTGGAGAAAGAGGTGGACGATAAGGGCGAGACCGTATACAGGTGCTACATTTGTGGGATCAAAAGCAGGAGAAGGTGGAATTTACAGGAACACATTAAGACCCACACGACGGAGAAAACATTCGTCTGTCCCTTGTGCGGGAAGAAATTTGCTTGTAAGCGCTACCTCTTGCAGCACCAGAGGGTGCACAGATGA
Protein Sequence
MKIHGTGKPFMCSYCGKRFVRKDRVEKHQKMHEQEDIECRMCLRKFRMRHHLMQHMVVHYRGKQHQCDNGNTSYNIDSESEVQQAADNREKDSEVRVLTREEKPSSSGTAVPSLWRMQDECSSIAEQQHTEKKSEELMNKEVDKSQKVYKCQKCGKEYSTNWYLNTHMKIHWMQKPFVCSTCGKRFLLKHHVVQHQKVHDEKKGFECMHCGKKCHREHNLKKHLMVHSRNKRDQHGNDGASSNIELKSEVQKSVDNKERLWECKACRKTFEKWEDLVEHRESHLGEDMLCKICGQKLGNMDELRTHVTNHMGVELFKCGICGMPFLTSGMLGWHMKSHTDKGKYSCNICGWRYSQRCNLLTHKKSHAKERPYSCKLCDRTFKKKEQLEDHEASHSMDSEAPVQTRGEKSTSSEMAVPSLSRLQKRKRVEQSSIAEQQRKMEKKAEEVIAEEMDKIQKVCKCQECGKEYAKNCYTNKNMKLHWTQKPYMCSNCRKSFLLKHHAVQHQKVHDEKKDFEYMQCGKECHMEHNLTKHLVAHSGKKRDDGASSNIKLKSEDRQSVDNKERLWECKACRKTFEKWEDLVEHRESHLGEDTLCKICGQKLGNMDELRTHVTNHMGVELFKCGICGRRFLTSDMLGWHLKSHRGKGKFSCDICGWRYSHKCRLLIHMNSHAKERPYSCKLCDRTFKKKEQLEEHDSEATVQTRGEKSTSSEIPVPSLSRLQKRKRVEQSSIAEQQRKMEKKAEEVIDEEMDKIQKVCKCQECGKEYAKNCYTNKNMKLHWTQKPFMCSNCRKSFLLKHHAVQHQKVHDEKKDFEYMQCGKECHMEHNLTKHLVAHSGKKRDDGVSSIIESKSEVRQSVDNKERLWKCKACRKTFEKWEDLVEHRESHLGADTLCKICRQKLDNMDELKIHACDAAVQTGDESPLSSEMAGPSLSSLLIRRKVSRSDVREHQKQLDVMRKLEKEVDDKGETVYRCYICGIKSRRRWNLQEHIKTHTTEKTFVCPLCGKKFACKRYLLQHQRVHR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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