Thag107856.1
Basic Information
- Insect
- Tanypteryx hageni
- Gene Symbol
- -
- Assembly
- GCA_028673005.1
- Location
- CM054119.1:20203673-20222075[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 2.7e-06 0.0019 21.2 4.8 1 23 22 44 22 44 0.99 2 18 2.6e-05 0.018 18.1 1.3 1 23 50 72 50 72 0.98 3 18 0.00012 0.084 16.0 1.0 1 23 78 100 78 100 0.97 4 18 0.00032 0.23 14.7 3.0 1 23 106 128 106 128 0.95 5 18 0.00019 0.13 15.4 0.9 2 23 135 156 134 156 0.97 6 18 0.00036 0.25 14.5 0.8 3 23 164 184 162 184 0.96 7 18 0.00018 0.12 15.5 0.3 1 23 190 212 190 212 0.98 8 18 6.8e-06 0.0048 20.0 0.8 1 23 218 240 218 240 0.96 9 18 0.11 74 6.8 1.9 1 13 246 258 246 260 0.91 10 18 2.1 1.4e+03 2.7 0.4 1 23 426 449 426 449 0.84 11 18 0.00096 0.68 13.2 4.7 1 23 456 478 456 478 0.97 12 18 5.5e-05 0.039 17.1 0.7 1 23 517 540 517 540 0.95 13 18 5.3 3.7e+03 1.4 0.5 2 20 547 565 546 568 0.87 14 18 0.00046 0.33 14.2 0.9 2 21 575 594 574 595 0.92 15 18 7.4e-05 0.052 16.7 0.6 2 23 604 625 603 625 0.96 16 18 8e-05 0.056 16.6 0.4 1 23 631 654 631 654 0.96 17 18 1.3e-07 9.4e-05 25.3 1.3 1 23 660 682 660 682 0.98 18 18 3.8e-05 0.027 17.6 3.5 1 23 688 711 688 711 0.98
Sequence Information
- Coding Sequence
- ATGAGAGAGTGGATGCGGAACACTGAAAGGGGAGCGGAGGAAGAGGATAACGGTCAAACTGTCTACAAGTGCCGCCATTGCGGTAAAGAATGCCCGAGGAAGTGGGCGTTAACCCGACACATGAAATCCCACGGGACGGAGAAGCCTTTCGTGTGTTCTGTCTGCGGGAAGAGTTTCCTCCTGAAGGATTACCTCTCCAAGCACCAGAAGACGCACGAAAAGAAGGACGGTTTTGAATGTAACGAGTGCGGGAAGAAGTTCCTCATGAGGCAGTACCTTATTAGGCACATGTCGTTACACAGCAGTAGGACGCTGTACAAGTGCTCTTACTGCAACAAGGCCTTCAAGAGGAAGTGCGAGGTTGGCGAACACCAGTCTGCGCACGATGGGGAAAGGGTGTGGGAGTGCAAGAGGTGCTCGAAGGGATTTGAGAAGTGGAAGGATTTGGTGCAGCATCGCAAGTCTCACCTGTGGGAGAGGAAGTTGGCGTGCGACATGTGCGGACGCAAGTTTGCTTGCAAAGGCGGTTTGAGAAGACACATGATGGGTCACATGGACATAAAACCGTACGAGTGCGGCATTTGCGGGAAGCGTTTCTTGAGAAGCGCTAGGCTCAGTTTGCACATGAACCTTCATACGGGCGAAGGGTTGTTTTCTTGCGACGTATGCGGAAAGAGTTTCCAGCAAAAGAGGAACCTTATAATTCACGACAGGACCCACACGGGAGAATGTCCGTTTTCTTGCAGATTTTGCGACAAGGCGTTCAAGCGAAAGGTGACGCCCGACGATGATCTTCCCCATTTTATATGCTGCGATTGTCTCGAGGAGGTGAGGAACTTGGACTGCGTCAGCCGAGAAGCCAAGAGGACGATGGGATACTTGATATGGCGGCAGAATGCATTGGCAGTCGGTTCCAGGCACGTCTCTCTCTGCTTCCTCGTTCTCTTCCTCTGTCTGCTTCCTCGTTCCGTCACTCTCCGGCTGCCCGTccgcgacgttGTGGAATCCAAGGACATCCTTCAATCTGATCCAAAACGACGATCTCACTACGTTCCATCATCAAACCAGGATGGGCCGGGCTGCAAACGGACGACTTTGGACCTtttcgaggacttaccatcgccAAGAAACCCGACTGATGCTCTCGACGGTGAATTGGATCTTCCCAAGTTGAATCTTGTCGGCGATTTTAGATTAGAAGGTAATGGGTTTCCCGAAAGAGGAAAGAGGTTGGAGTTTTCCTCGGAAAGTCGTCGAGAGCAGGACGATGAAGTGCATCGTTGCGCAAAGTGCGGGGAAGAATTGCTCGGTGCCATTGGGTTGCGTCGTCACACGAAGCTCTTTCATTCTGACGACAGCAAAGGGTATGCGTGCGGAAAGTGCTGCCGAAAATTTAGTCGGAGAAAGAGTTTGGCGAGACACATAAAAAAACACGACTTTCGGTGTAAGTGGAGGGAGATTGAAGGCGTAATCGAGGAATTAAACGGCGTGGATTGCGTGGGAACGATAGAACCAGGTGATTCGACGATAGGTTCCTCCAGGAATACTTATGCGTGCGACGTATGCACGGAAAGTTTCACATCGAAAAAGAAACTCGTCTCCCACTTGAAGGAAACACACGGAGCAGTCAGACCGGTCGTCTGCATGACGTGCAAGTTGGGATTTTGCACATATCTCGAATTGGGAATTCACAGACCTTCTCACAAAGGCAGTAAGCCGTTAGTTTGCAAGACGTGCGGAGGGAGCTTTTCATCCAAGGATTATTTCAAGCACCACGTACTCAGGTGCGAGAAGAAGATCGTTCCCCTCCAATGCGGCGTATGCGATAAGCTGTCTTCTTCGTCGAGCAACCTGAAGAAGCATTATTTACTCCATTTATCCATCAAGAAGTACTCGTGCCAGTTTTGCGAGAAGAGATATACTGAAAGGGGTGATTTGACTGTCCACTTGAGGGCGGCACACACGCATCACAGGCCGTATAAGTGCGGAATCTGTCAAAGAAGCTTTGCCAACAAGTCTCACTTGACAGTCCACATCGTAACCCATTCGGACGAACGACCTTTCAAGTGTGAAGTTTGCGGCAGGCGTTTCAAAAGATGTTATGTCGTTAAGCAACACATAAGGAAGATACACAGAATCACCGACGACAATGATGTTCTTCGTAGTTACGCAATTTGA
- Protein Sequence
- MREWMRNTERGAEEEDNGQTVYKCRHCGKECPRKWALTRHMKSHGTEKPFVCSVCGKSFLLKDYLSKHQKTHEKKDGFECNECGKKFLMRQYLIRHMSLHSSRTLYKCSYCNKAFKRKCEVGEHQSAHDGERVWECKRCSKGFEKWKDLVQHRKSHLWERKLACDMCGRKFACKGGLRRHMMGHMDIKPYECGICGKRFLRSARLSLHMNLHTGEGLFSCDVCGKSFQQKRNLIIHDRTHTGECPFSCRFCDKAFKRKVTPDDDLPHFICCDCLEEVRNLDCVSREAKRTMGYLIWRQNALAVGSRHVSLCFLVLFLCLLPRSVTLRLPVRDVVESKDILQSDPKRRSHYVPSSNQDGPGCKRTTLDLFEDLPSPRNPTDALDGELDLPKLNLVGDFRLEGNGFPERGKRLEFSSESRREQDDEVHRCAKCGEELLGAIGLRRHTKLFHSDDSKGYACGKCCRKFSRRKSLARHIKKHDFRCKWREIEGVIEELNGVDCVGTIEPGDSTIGSSRNTYACDVCTESFTSKKKLVSHLKETHGAVRPVVCMTCKLGFCTYLELGIHRPSHKGSKPLVCKTCGGSFSSKDYFKHHVLRCEKKIVPLQCGVCDKLSSSSSNLKKHYLLHLSIKKYSCQFCEKRYTERGDLTVHLRAAHTHHRPYKCGICQRSFANKSHLTVHIVTHSDERPFKCEVCGRRFKRCYVVKQHIRKIHRITDDNDVLRSYAI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -