Thag107527.1
Basic Information
- Insect
- Tanypteryx hageni
- Gene Symbol
- -
- Assembly
- GCA_028673005.1
- Location
- CM054119.1:15804029-15829192[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.2e-06 0.00085 22.3 7.0 1 23 76 98 76 98 0.99 2 17 0.00086 0.6 13.3 1.9 1 23 104 126 104 126 0.97 3 17 2e-05 0.014 18.5 1.4 1 23 132 154 132 154 0.98 4 17 0.00032 0.23 14.7 0.7 1 20 160 179 160 182 0.92 5 17 6.6e-05 0.046 16.9 0.4 2 23 189 210 188 210 0.97 6 17 6.3e-06 0.0044 20.1 7.2 1 23 272 294 272 294 0.98 7 17 0.00037 0.26 14.5 5.3 1 23 300 322 300 322 0.98 8 17 8.2e-09 5.8e-06 29.1 1.3 1 23 328 350 328 350 0.98 9 17 0.00017 0.12 15.5 3.1 1 23 356 378 356 378 0.98 10 17 7.4e-06 0.0052 19.8 0.6 2 23 385 406 384 406 0.97 11 17 1.1e-06 0.00076 22.5 0.5 2 23 413 434 412 434 0.96 12 17 8.2e-06 0.0058 19.7 3.1 1 23 440 462 440 462 0.97 13 17 1.2e-06 0.00085 22.3 7.0 1 23 531 553 531 553 0.99 14 17 0.0022 1.6 12.0 2.2 1 23 559 581 559 581 0.97 15 17 2e-05 0.014 18.5 1.4 1 23 587 609 587 609 0.98 16 17 0.00032 0.23 14.7 0.7 1 20 615 634 615 637 0.92 17 17 6.6e-05 0.046 16.9 0.4 2 23 644 665 643 665 0.97
Sequence Information
- Coding Sequence
- ATGCCAGTGAAAGAGGAACCACGTGATGACTTCGAGGTAGAGGCTGAGgtttGTGATGTGACAGACCCAACCAAAGATGAGGATCCGTTGTCCGAGATGCCAGCACCTAGATTAAGGAGAGTGCAAAAGACAGACACACGATCAAATGCTGGAGAGCAGGTGCAGCACATGAAAAGGGTggtagaggaggaggtggagaacgACAAGGACAATGGCCGCAAGTCGTACCAGTGCCACCATTGTGGGAAAGAATGCTCAAGGAAGTGGGATTTAAGTCGGCACATGAAGATCCATGGCACGGAGAAACCTTTCGCGTGTTCCACCTGCGGGAAGAGATTCCTCGAGAAGCACTACCTCTTGGCGCACCAGAAGATACACGGAAATAAGAtgtatttcaaatgcaaagagtgcggGAAGAGGTTCCTCGTGAGGAAATATCTGATTAAACACATGTTGGTGCACACCGGTAGAAAGCCATTTAAGTGCGCTTACTGCGACGAAAGCTTCAAGAGGAAGCTTGAGCTGGACGACCACCAACCTTCGCACGATGGTGAGAGATTGTGGGAATGCGAGGAATGCAGGAAGGGATTCGAGAAGTGGAAGGATTTGGTGAATCACCGCAAGTCCCATTTCGGAGAGAAAAAGTTGgcttGTGATGCGACAGACCCGACCAGAGAAGAGAATCCGTTGTCTGAGGTGCCTTTGCCTGGATTAAGGAGCTTGCGGAAGAGGGAGACACAATCAAACATTGGAGACGAGATACAGAAGATGGAAacagaggaagggatagagactGATCGGGGATGGAAGGTACACAAGTGCCGCCATTGTGAGAAAGAATTCACAAAGAATAGTTATTTAAAGAATCACATGAGGATCCACGGAACGGAGAAACTTTTCatgtgttctacatgtgggagGAGGTTCCTCCTGAAATACCATCTAACGCGGCACCAGAAGACTCACGAAATGAATAAGGAATACGAATGTAAAGAATGTGGGAAGAAGTTCAGTAGGAAGGAGAACCTGATTAAACACAGGATGGTGCATACCGGTAAGAAGCCATACCAGTGCACTCACTGCAACATGAACTTCAAGAGTAAAGTCAAACTGGACGATCACCAATCCGTGCATGACGGGGAGACGGTGTGGGAATGTAAGGATTGCAAGAAGGAATTTGAGAGGTGGAAGGATTTAGTGGATCATCGCAAGTCTCATTTCGGGGAGAAGAAGTTGGTCTGCGACATCTGCGGACGAAAGTTTGCTTATAAATACTATTTGAGGAGACACGTAAATAGTCACATGGGTATAAAAGCGCACGAATGCGACGTTTGCGGAAAGCGGTTCTCGAGTCCTGATTGTCTCCGTTTGCACACGAAACTTCACACTGGTGACGGGATGTTCTCTTGCGATGCTTGTGATGTGACAGACCCAACCAAAGATGAGGATCCGTTGTCCGAGATGCCAGCACCTAGATTAAGGAGAGTGCAAAAGAGAAACACACGATCAAACGCTGGAGAGCAGGTGCAGCACATGAAAAGGGTggtagaggaggaggtggagaacgACAAGGACAATGGCCGCAAGTCGTACCAGTGCCACCATTGTGGGAAAGAATGCTCAAGGAAGTGGGATTTAAGTCGACACATGAAGATCCATGGCACGGAGAAACCTTTCGCGTGTTCCACCTGCGGGAAGAGATTCCTCGAGAAGCATTACCTCTTGGAGCACCAGAAGATACACGGAAGGAAGAtgtatttcaaatgcaaagagtgcggGAAGAGGTTCCTCGTGAGGAAATATCTGATTAAGCACATGTTGGTGCACACCGGTAGAAAGCCATTTAAGTGCGCTTACTGCGACGAAAGCTTCAAGAGGAAGCTTGAGCTGGACGACCACCAACCTTCGCACGATGGTGAGAGATTGTGGGAATGCGAGGAATGCAGGAAGGGATTCGAGAAGTGGAAGGATTTGGTGAATCACCGCAAGTCCCATTTCGGAGAGAAAAAGTTGGTATGTGACTTGTGCGGATGGAGCAACAATGGGTCAGTTGCAGCTGCCACCTTTAACTGCCCTGGGCAGAAGAAGGAAATGATGGCACTCCAATTCGTTCAGGTGATCCATGTGCCGGACAAGTGCTCCCTCTTCTTGAGTGATATTGTCATGCTAGTACCCTTCCAAGCAAGCCTGGAGACCTCGAATTTCACTTAG
- Protein Sequence
- MPVKEEPRDDFEVEAEVCDVTDPTKDEDPLSEMPAPRLRRVQKTDTRSNAGEQVQHMKRVVEEEVENDKDNGRKSYQCHHCGKECSRKWDLSRHMKIHGTEKPFACSTCGKRFLEKHYLLAHQKIHGNKMYFKCKECGKRFLVRKYLIKHMLVHTGRKPFKCAYCDESFKRKLELDDHQPSHDGERLWECEECRKGFEKWKDLVNHRKSHFGEKKLACDATDPTREENPLSEVPLPGLRSLRKRETQSNIGDEIQKMETEEGIETDRGWKVHKCRHCEKEFTKNSYLKNHMRIHGTEKLFMCSTCGRRFLLKYHLTRHQKTHEMNKEYECKECGKKFSRKENLIKHRMVHTGKKPYQCTHCNMNFKSKVKLDDHQSVHDGETVWECKDCKKEFERWKDLVDHRKSHFGEKKLVCDICGRKFAYKYYLRRHVNSHMGIKAHECDVCGKRFSSPDCLRLHTKLHTGDGMFSCDACDVTDPTKDEDPLSEMPAPRLRRVQKRNTRSNAGEQVQHMKRVVEEEVENDKDNGRKSYQCHHCGKECSRKWDLSRHMKIHGTEKPFACSTCGKRFLEKHYLLEHQKIHGRKMYFKCKECGKRFLVRKYLIKHMLVHTGRKPFKCAYCDESFKRKLELDDHQPSHDGERLWECEECRKGFEKWKDLVNHRKSHFGEKKLVCDLCGWSNNGSVAAATFNCPGQKKEMMALQFVQVIHVPDKCSLFLSDIVMLVPFQASLETSNFT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -